| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0207 |
|---|
| Symbol | |
|---|
| ID | 5104073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 170186 |
|---|
| End bp | 170539 |
|---|
| Gene Length | 354 bp |
|---|
| Protein Length | 117 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640506112 |
|---|
| Product | peptidyl-tRNA hydrolase |
|---|
| Protein accession | YP_001190308 |
|---|
| Protein GI | 146302992 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1990] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00283] peptidyl-tRNA hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.223033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0587052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGG TAGTCATGGT GAGAACAGAT ATCAACATGG GTAAAGGTAA GATAGCTGCA
CAAGTCGCTC ACGCCGCGGT CAGCCTGGTC CTGGATTGTA TGAGTAGATC AAGCTGGAGG
GACTGGCTAG ATAGCTGGCT TCACGAGGGA CAGCCAAAGG TTGTCGTCAA GGTGAGCTCC
CTAGAGGATC TTCTTTCTAG GGTGGATAAG GCCAGATCGC AGGGACTGCC CACGACCGTC
ATATCTGACG CGGGGAGGAC CCAGGTCGAA CCGGGAACCG TGACATGTGC GGGGATAGGA
CCAGGACCAG ACGATCTAAT TGATAAAATA ACCGGTGACC TGAAACTACT GTGA
|
|---|
| Protein sequence | MKMVVMVRTD INMGKGKIAA QVAHAAVSLV LDCMSRSSWR DWLDSWLHEG QPKVVVKVSS
LEDLLSRVDK ARSQGLPTTV ISDAGRTQVE PGTVTCAGIG PGPDDLIDKI TGDLKLL
|
|---|
| |