| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0201 |
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| Symbol | |
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| ID | 5103945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 164663 |
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| End bp | 166321 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640506106 |
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| Product | thiamine pyrophosphate enzyme, central region |
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| Protein accession | YP_001190302 |
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| Protein GI | 146302986 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.582625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0361256 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCAGTT TCTGGTATTA TAGCGATCCA ACTTTGAGCC AGCCTAAGAG GAAAGAGGAG
ACCGTAGGTA GGGAGATGAC GGGAGATGAG GCATTAGCTT ACGTCCTTAA GGAAATAGGA
GTTAAGCGAG TGTTCACCTC GAACGCAGTC CCAGATTTCC TTAGGGAGAG ATTAGCCCAG
TATGGCCTTG AAATAGATAT TTCCTTGAGT GTAAGGGAGG CTCTGGAACT GGCAGACGCT
TTCGCCAGGG ATTCAGGAGA TGCTGGAGTT GTAATCAGCA CTCCAGGAAG CTCATTACTC
GAGGGTAGCA GTGTAGTGGC TCAGGCATTC TCCGATTCCG TTCCGCTACT CATGATCGGT
ACATTGAGGT CCTATAGGGA TGTGGGAAAG GCTAGAGTTG GCGAACTGAA GTCACCTGAC
GACGTATCAA GTTCCCTCTC ACCCTTCATC AAGTTCAAGG AGAGGGTAAT CAGCATAGAG
GAGATTACAG TCACTGTGGA GAAGGGGTAC AAGGAAGCTC TGAGCAATAG AATGAGGCCC
GCTCTTGTGG AGATAGCAGA GGAGCTTTTC CGGTTAAAGG CATATCCACT CTCTACCGCA
GAGCAGAAGC CTGAGAGGAA GACGCCAGAC AAAAACACAG TGGCCAAGGT GGCTGAGGTA
ATGGGAAACT CCAAGTTGCC TGTAGTGGTT GCAGGGTATG GAGTTAGGGC AAGCAATGCG
TCACCTCAAT TATTGGAACT CGCGGAGTTA CTTGACGCGC CGGTGATCAC AACCTTTAGA
GCCAAGGGAG TTTTCCCGGC CTCACATCCG CTCTACGCAG GCGAGGGATT GGGAGCATTT
TCCACGGAAG TTGCTTCCAA GCTCATGATG GAAGCAGACT CGATTCTAGT ACTTGGGTCT
AGATTGCCTC AACTTAGTAC TGCCGGCTGG TCCATGAGGT ATAAGGGTTT CCTCATGCAC
AACAATGTGG ATGGAGAGGA TATAGGCAAG GTAGTAATGC CACAACTTCC CATTGTTGCA
GACACAGGCC TCTTCCTTAA GGAACTGATA ACAATACTCA AACAGAAACT AAAGGAAAAC
ATCAAGAGGG AGGTGAGAAG CGAGATAGCG TCAAGCAGGA GAGTGTTCAC CATGAAACCC
CACTCGGGAC TATGGCCATA TGACGTTACT AGGCTTCTAC AACAGTTCAA GTTTTCGAGA
TACTTCGTGG ATTTGAGTGC CCCAACTCTC GACCTGGTTA GACTGCCCAT CGAGAGCCCT
GTGTGGAACA CGAGCGAATC AATTCTCGAG AAGGGAATAG GTGTCGCTGG TGTGCTGCAG
TCCAACGATC CAGGTGCCCT CGGGATTACT GACCTAGCTG GTGTACTAAG AAATGTTGGC
CTCATTCAGC AAAGGGCTGA AAAGGCGAAG GGAGTAATCC TTGTGCTCAA TGACGGGGGA
GCCACTTACC TTGACACGTT CAAATCGGAC ATACCGTCTA TAGGAAAATC GGGAACGTTT
GTGGACGTGG ATGAATTCCT AGAGAGATCC ACGGGGGCAG TCACAGTGGA TACCTACGGA
GGGTTGAAGG ACATCCTGGA GCGGAGAGAC CCTAAGCTCA AGGTAATAAA CGTGAAGATA
GATCCGGATT ACGAGTCAAT CGTTCTTCTA AAACCATAA
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| Protein sequence | MTSFWYYSDP TLSQPKRKEE TVGREMTGDE ALAYVLKEIG VKRVFTSNAV PDFLRERLAQ
YGLEIDISLS VREALELADA FARDSGDAGV VISTPGSSLL EGSSVVAQAF SDSVPLLMIG
TLRSYRDVGK ARVGELKSPD DVSSSLSPFI KFKERVISIE EITVTVEKGY KEALSNRMRP
ALVEIAEELF RLKAYPLSTA EQKPERKTPD KNTVAKVAEV MGNSKLPVVV AGYGVRASNA
SPQLLELAEL LDAPVITTFR AKGVFPASHP LYAGEGLGAF STEVASKLMM EADSILVLGS
RLPQLSTAGW SMRYKGFLMH NNVDGEDIGK VVMPQLPIVA DTGLFLKELI TILKQKLKEN
IKREVRSEIA SSRRVFTMKP HSGLWPYDVT RLLQQFKFSR YFVDLSAPTL DLVRLPIESP
VWNTSESILE KGIGVAGVLQ SNDPGALGIT DLAGVLRNVG LIQQRAEKAK GVILVLNDGG
ATYLDTFKSD IPSIGKSGTF VDVDEFLERS TGAVTVDTYG GLKDILERRD PKLKVINVKI
DPDYESIVLL KP
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