Gene Msed_0112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0112 
Symbolrpl30p 
ID5103920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp93823 
End bp94284 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content42% 
IMG OID640506011 
Product50S ribosomal protein L30P 
Protein accessionYP_001190213 
Protein GI146302897 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1841] Ribosomal protein L30/L7E 
TIGRFAM ID[TIGR01309] 50S ribosomal protein L30P, archaeal 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000210294 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000357235 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTCGTCTA TCCTTATTGT AAGGATAAGG GGAAGTGCCT CAACCCCCTG GGATCTTCAG 
GAGGTTCTGG AGATGCTTAG GTTAAGTAAA CAGTATAGCG CAATGGTGTA TCCAAAGCAG
GATGATATTG TAGGAATGGT GAGGAAGGTT CAGTCTTACG TTACCTGGGG AGAGCTTAAC
ATGGACGGAG CAAAGGCGTT AATGGCAAGA ATAGAGACCG TTAAAGGCGC ACTAGATCAA
TCCTTTATTG AAAAGGAGCT GGGGCTATCA ACGGAAGACT TCATTAAGAA ATTAGTAGAC
GGAGAACTAA AATTAAACTC TATTCCCTCT ATAAAACTTC CCATAAGACT TCATCCACCT
AGGAAGGGAT TCAAAGGGAA GATAAACTCC TTTATTGGAT CGGGAGGAGA GCTAGGTTAC
AGAGGAGAAA AGATTAATGA ACTTGTAAGG AGGATGGTGT AA
 
Protein sequence
MSSILIVRIR GSASTPWDLQ EVLEMLRLSK QYSAMVYPKQ DDIVGMVRKV QSYVTWGELN 
MDGAKALMAR IETVKGALDQ SFIEKELGLS TEDFIKKLVD GELKLNSIPS IKLPIRLHPP
RKGFKGKINS FIGSGGELGY RGEKINELVR RMV