| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0080 |
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| Symbol | |
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| ID | 5104658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 71431 |
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| End bp | 71910 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640505979 |
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| Product | ribosomal biogenesis protein, containing Brix domain |
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| Protein accession | YP_001190181 |
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| Protein GI | 146302865 |
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| COG category | [A] RNA processing and modification
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2136] Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.158541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00026284 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGATTACTA GCTCTAGGGA TACATCCAGT AGAACAAGGA GTTTTTTAAA TTATTTAGAG
TACATTTTTC CTTATTCAGT GAAGGTAAAT AGGGGAAAAA GGAGTATTGA TGAGGTTTTT
AAGATAGCGA GTCTATTGGG TGGAGAGTTA CTCCTATTAG TTAATGTTTT AAAGGGCAAT
CCTAGTTCCC TGGAGGTTTA TGATGTGATT ACCAGAGAAA AATTGTACAA TTTCTCGATA
AAGGGCCTGA GGCTCAGAAG CGATTATGAG AAGTTTTCGT TATATAATTC CAGACGTAGA
TTATGCATTA AACATGCTGA GTTCGGGTGT AGCAAGGTGA TTTCTCTCCT CATAGATCTC
GGGGCCACAA GGGCATCAGA CTGCACGGTC CACGCTGAGA TAAAGTTTAA CGAATACTGT
ACAGTAAGGT TTTCGAATTC TCAGGACAAG GAGATTCTCC TTCTGGGGTT AGCAGAATGA
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| Protein sequence | MITSSRDTSS RTRSFLNYLE YIFPYSVKVN RGKRSIDEVF KIASLLGGEL LLLVNVLKGN
PSSLEVYDVI TREKLYNFSI KGLRLRSDYE KFSLYNSRRR LCIKHAEFGC SKVISLLIDL
GATRASDCTV HAEIKFNEYC TVRFSNSQDK EILLLGLAE
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