| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0077 |
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| Symbol | |
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| ID | 5104655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 69627 |
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| End bp | 70364 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640505976 |
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| Product | exosome complex exonuclease Rrp41 |
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| Protein accession | YP_001190178 |
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| Protein GI | 146302862 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0689] RNase PH |
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| TIGRFAM ID | [TIGR02065] archaeal exosome-like complex exonuclease 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.206414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00426445 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTACAAG TTCAGAAGCC CAAACTAATA CTTGATGATG GAAGAAGACT TGACGGAAGG
AGACCAGATG AGCTAAGACC AATGAAAATG GAGATAGGAG TACTGAAGAA TGCCGACGGC
TCGTCTTTGG TGGAGGTAGG AAATACTAAA ATTATTGCAG CCGTTTACGG TCCTAGGGAA
ATGCACCCAA GGCATTTGGC CCTTCCAAAC AGGGCAACGC TGAGGGTGAG ATATCATATG
ACCCCTTTTT CTACTGACGA GAGAAAAAGC CCCGTACCTA GCAGAAGAGA GATTGAGCTC
TCTAAGGTAA TAAGGGAAGC ATTGGAATCT TCTATACTTG TGGAGCAGTT TCCAAGGTCG
TCCATTGATG TATTCATGGA AGTTATTCAA GCAGATGCTG GAACTAGGTT AGCCTCTCTC
ATGGCTGCTT CACTGGCTGT GGTGGATGCA GGAATTCCAG TGAAGGACGT GATTGCAGCA
GTGGCCGTGG GTAAGGCAGA CGGTGTAGTT GTACTGGATC TTAACGAGCC CGAGGACATG
TGGGGTGAGG CAGATATGCC TGTAGCTATG TTACCGTCGT TAGGACAAAT AACCCTTATT
CAGCTCAATG GTAACATGAC TCAGCAAGAG TTTAAGCAGG GATTGGAGTT GGCATACAAA
GGTATTAGCA CTATTTATAA CTTGGAAAAG GAGGTACTAC GAAACAAATT CGCCGAAATT
CACGAGGAGG GATCCTAA
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| Protein sequence | MLQVQKPKLI LDDGRRLDGR RPDELRPMKM EIGVLKNADG SSLVEVGNTK IIAAVYGPRE
MHPRHLALPN RATLRVRYHM TPFSTDERKS PVPSRREIEL SKVIREALES SILVEQFPRS
SIDVFMEVIQ ADAGTRLASL MAASLAVVDA GIPVKDVIAA VAVGKADGVV VLDLNEPEDM
WGEADMPVAM LPSLGQITLI QLNGNMTQQE FKQGLELAYK GISTIYNLEK EVLRNKFAEI
HEEGS
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