| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0075 |
|---|
| Symbol | |
|---|
| ID | 5104653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 68218 |
|---|
| End bp | 68916 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640505974 |
|---|
| Product | putative RNA-associated protein |
|---|
| Protein accession | YP_001190176 |
|---|
| Protein GI | 146302860 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1500] Predicted exosome subunit |
|---|
| TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00402818 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0125546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCCGA AGGATTACGT CATAGTCAAA TATGAGAGTC ACGGAGAAAG GTTTGAAATT
CTTGTCAAAC CTAAGGAAGC TATGGAAATA AGGGAGGGCA AGAGCGTATC TCTTTCGGAC
GCAGTAGTCT CGGATACTAT TTACAAGGAT GTTAAGAAGG GGTTAAAGGC CTCCCCATCT
TCTCTAAAGA AGGTTTTTGG AACCACAGAT TTTGAAACAA TCTCAAGGGA AATAATACTC
AAGGGAGAGA TCCCAATTAC GGCCGAGCAA AGAAAAGAGA TGCTTGAGGC CAAGAGGAAG
CAAATAATTG ATTTTATTCA TAGAAACGCT GTGGATCCTA AGACCAATCT TCCCATACCT
CCAGCTAGGT TGGAAATGGC CTTGGAACAA GCTAGGGTAC AGATAGATAT AAATAAGGAG
GTTGAGGCCC AGGCTCTACA AATCATCCAT GAATTAACAA GGATAATACC CATCAAGATA
GCCAGAGCTC TCCTAGAGGT TAAGGTTCCC CAAAGGTACT CTGGAAAAGC GAAGCAGCAG
CTTAGCTCCC TGGGGAGCGT TAAGAAAACA GTGTGGCTTG ATGATGGTAC TCTAGTGGCT
GAGATAGAAA TACCAGCTGG AGCTCAACAA GATGTAATAG ATAAGTTAAA TTCTATAACT
AAAGGTGAAG TAGAAGTTAG AGTACTTCAA GTGAAGTGA
|
|---|
| Protein sequence | MGPKDYVIVK YESHGERFEI LVKPKEAMEI REGKSVSLSD AVVSDTIYKD VKKGLKASPS
SLKKVFGTTD FETISREIIL KGEIPITAEQ RKEMLEAKRK QIIDFIHRNA VDPKTNLPIP
PARLEMALEQ ARVQIDINKE VEAQALQIIH ELTRIIPIKI ARALLEVKVP QRYSGKAKQQ
LSSLGSVKKT VWLDDGTLVA EIEIPAGAQQ DVIDKLNSIT KGEVEVRVLQ VK
|
|---|
| |