| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0066 |
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| Symbol | |
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| ID | 5104644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 61451 |
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| End bp | 62146 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640505965 |
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| Product | tRNA/rRNA methyltransferase (SpoU) |
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| Protein accession | YP_001190167 |
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| Protein GI | 146302851 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0565] rRNA methylase |
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| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0596195 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0096121 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCTAAGGG TTATACTGGT GGAGCCTGAA GGGGAATATA ACGTAGGATT TGTAGCGAGA
TTATGTAAGA ACTTTGAAGT CGATCAACTA TACATAGTTA ATCCCAGGTG TGACCTCAAC
AAGGCCTTGG AGTTCTCGGC AAAGGGAAGA GATTTCATGG AGAAGGTAGT AGTTACCTCA
ACCCTGGAGG AGGCGCTGCG TGACTTGGAT CTAAAGATAT CCACATCTAG TATTGCCGAT
TCTAAGGGAG ATATGTTACG AAAGTCCATG CCTCCCTGGG AGATCGTCAA ATTGATGGAA
AATAGGAAGA CAGGTTTAGT GTTTGGCAGG GAGAGCGTGG GCTTAACGAG GGAGGAGATA
TTAATGACAG ATATCATGGT TCACATCCCA GCCAATAGAA GCTACCCAGT CCTCAATCTG
TCTCATGCTG TTGGAATAGT TCTCTATGAG ATCTGGAAGT CCACCCATCT GCGTGGAGGC
GAGACCGGTC CTGCTCCTTC CCAGGAGACA TTGAGCCTAG TTGATAAGTA CGTGAAGACC
CTTTACGACG CGATCAAGAG GTCTAACGGA GATGAAGCAA TGTATATTGC AACCAAGAGG
TCACTACTGC GGGGCATTAG GGACGAGGAA GAGGGGAGAG CAGTGGTTAG GTTCCTTAGA
AAGGTCTACA TGAGAATGAT CCATAGCAAT GAATGA
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| Protein sequence | MLRVILVEPE GEYNVGFVAR LCKNFEVDQL YIVNPRCDLN KALEFSAKGR DFMEKVVVTS
TLEEALRDLD LKISTSSIAD SKGDMLRKSM PPWEIVKLME NRKTGLVFGR ESVGLTREEI
LMTDIMVHIP ANRSYPVLNL SHAVGIVLYE IWKSTHLRGG ETGPAPSQET LSLVDKYVKT
LYDAIKRSNG DEAMYIATKR SLLRGIRDEE EGRAVVRFLR KVYMRMIHSN E
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