| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0057 |
|---|
| Symbol | |
|---|
| ID | 5104635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 52182 |
|---|
| End bp | 52883 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640505952 |
|---|
| Product | PUA domain-containing protein |
|---|
| Protein accession | YP_001190158 |
|---|
| Protein GI | 146302842 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00451] uncharacterized domain 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.510728 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTGG TAACGAAGTC GGGTAAGGAG TATGTATGTT TAATGGAGGT CCATTGTGAT
TTTCAGGAGG AAAGGCTTAG GGCGATTGCC AAGGAGTTCG TTGGGACAAT ATATCAAAAG
CCACCCGTGA GATCTTCGGT GAAGAGAAGG GTAAGGAAGA GGAAGATCTA TTCGCTGGAG
GTTCTTGAGA TGGAAGGAAG AAGAGTCCTC ATGAAAATCT CCTCAGAACC TGGAACCTAC
ATGAGGAAGA TTTGCCACGA CATGGGCATC CTCCTGGGTT GCGGTGCCCA CATGAGGGAA
TTGAGGAGAA CAAGGTCAGG AATATTCACC GAGGATACAG TTGTAACGTT ACAACAGGTT
TCGGAGGCCC TCTATCTTTA CCGCAACTGC GGTGAGGAGG ATGAGCTGAG GAGAATACTC
ATTCCCATGG AGATGGCCTT CTGCGGGATA CCCAAGATAA TCGTAGACGA TGAGACAGTG
AACTCCCTAG CCTACGGCTC CCCCTTGATG GCGCCAGGAA TAGTGGCCTT TCAGGGATTT
AAGAAAGGAG ATACGGTGGC GCTCATAACT TGGAAGGGAG AGGGAATAGC CTTGGGAAAG
GCCCTGGTAG ATTCAGTGAG TATGGGTAAG AGGGGAGAGG TAGTGAAGCC TGAAAGGGTA
TTAATGGATA AAGATGTGTA CCCGAAGGCA TGGAAGAAAT GA
|
|---|
| Protein sequence | MSVVTKSGKE YVCLMEVHCD FQEERLRAIA KEFVGTIYQK PPVRSSVKRR VRKRKIYSLE
VLEMEGRRVL MKISSEPGTY MRKICHDMGI LLGCGAHMRE LRRTRSGIFT EDTVVTLQQV
SEALYLYRNC GEEDELRRIL IPMEMAFCGI PKIIVDDETV NSLAYGSPLM APGIVAFQGF
KKGDTVALIT WKGEGIALGK ALVDSVSMGK RGEVVKPERV LMDKDVYPKA WKK
|
|---|
| |