| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0054 |
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| Symbol | |
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| ID | 5104632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 48813 |
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| End bp | 51530 |
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| Gene Length | 2718 bp |
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| Protein Length | 905 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640505949 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001190155 |
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| Protein GI | 146302839 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.68416 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCAG TATCTCAAGA GTTTATCTCT AGGCTACAAT CTCTAGGATA CAGGGAACTT
ACACCCATTC AGAAGCTGGC AATTCCTAGT ATTCTAAAGG GCAAACACAC ACTGGTCATA
GCTCCTACAG GTTATGGTAA GACGGAAGCT GCCATAATTC CAGTAATGTA TCAGATCTTT
GCCAAGGGAT ATGAAAGGAT ATCAGCGCTT TACATTACTC CCTTAAGGGC ACTCAACAGG
GATCTGGAAG GGAGATTGAA GAGCTTTAGT CAGACCTTTG GAATTAGGGT AGCAACTAGA
CATGGGGACA ACTCCAGAAA GGAGAGAAGG GAGATCATCC TTAATCCTCC AGATCTTCTC
ATTACAACAC CTGAGACCCT ACTCTATCTA ATCGTGGATA AGAGGGTTAA GAAGCTACTA
GCTAACCTCA AATGGGTTAT CATTGACGAA TTGCAAGAAA TGCTTGACCA GAAGAGGGGT
TATGAGCTAT CTGTGGTACT TCAACGCCTC AAGAGGATCT CCAGAAACCC GAGATTTATT
GGCCTCTCCG CAACTATCAG CGACGTTGAA CTGGCGAAGT CCTATCTGAG CCTAGACGAG
GAGGTCGAGG TTGCCAAGGT AGATGGGAGG AAGGACACGG AAATTCTCAT TGAGACCCCA
GAGCCCTCAC AGGAGGTCGT TGATCTAGCG GTAAAGAGAG GAATGGACCC CATACTGCTA
GCTAGATTAC TCAGGCTTAA GGACGTAATA GAGAAAAATA GGCCAGTTCT CATTTTTACC
AACACAAGGG AGACCGCAGA ATTCCTTGCC AATCAACTAC AAACCATGTT CAATCTGAGG
GTTGCAACCC ATCACGGTTC GCTCTCCAAG GAGATTAGGA CTAACATGGA GTCCAGTTTT
AAGGCAGGTG AGCTGGACGC AATTGTTGCG ACGTCAAGCC TGGAACTGGG TATAGACATA
GGTACTATTT CCCTAGTGGT TCAGTACATG TCTCCAAGAC AGACCATAAG GCTTCTACAG
AGGGTTGGGA GGAGCGGACA TTCCCTTAAC AGGAAGGCTA GGGGACTCGT CATCCCTGGG
AATTACATGT ACGACGTACT TGAATGTAAG GCTATTACGG AACTATCTAA GTCCTATTTA
GAGCCCATGA TAAAGGAGGA GAACCCCCTG GACGTATTGG CCCATCAGAT AGCAGGGATG
GTGATAGAGG GACCGCTTCT CATGTCAGAT GCACTTGAAA TATTTAGGGG CTCCCCCTAC
TTCAGAAACC TCACCCCAGA ACTCCTTGAG GCAGTCGTGG AACAACTTGA GGCAGAGAGG
GTAGTGAAAA GGGAGGGAGA GGTCCTGAAA CCCTCTAGGA GGACTTGGAA GTACTATTAC
ACTGTGAACA TGATTCCAGA CTCCAACATG TCCTACCTCG TCATTAACAC CAACACCAAC
TCCAGGATAG GAAATCTAGA TTTCGATTTC GTGTCAATTC TAGACGAGGA TAGCGTTTTC
GTCCTAGGAG GGAGACTTTG GAGAGTGGTG TCCATAGAGG AGGGTAAGGT CTTTGTGTCC
CCAGCTGAAC TCAAGAAGGG TGATCTACCC AGTTGGTTCG GCGAGGCCAT ACCAGTGGAG
AAGGAGGTCT CAATGAAGGT TTACGAATAT CTAACCGAAT CCTTTGCGGG AAGAAGGGAG
ATCGAGCCTG AACTCAAGGC CAAGATAGAG AGTCACCTCT CGAGGAATTA CCCAGCCCTA
AGGAGGGATT TGATCCTGGT GGAACTAGTG AACTCGGATC TCCTTGTAAT CCACTCTCCC
TTCGGTACTA GGGGTAACAA CACCTTGGGG TCACTCATAT CCGCTGTTCT CTCCTCCATG
GGATACAGAA CCTCGTTCAG AAGCGACCCC TATCATGTGG TGTTAACCTC CATGGTGCCT
CTAGATGTGG GGGTAGTGGA GGACGTCCTG GGCAAGGTTA AATCCATGGA CCCTGAATAT
GCCTCCAGGT TACTGGAGCA GCAAGTCGTT AATGAACCTG AATTCAAGTG GATTTTACTC
ATAGAGGCAC AGCGTTTTGG TGCCATAGAG AAGGGAACCG AAATCAAACT GGGCCATTAC
GTCCTGAGGG CCTACATTGA CACCGTGATA GGGAAAGAGG CGATCAAGGA GTTTATGCTA
AGATTTCACG ATGTATCTAT CCTTTCAATT CTCAAGGGGA TGGCATGGGA AGTCGTGGAA
GTTCCTTCGC CATCTCCTCT TGCCCAGGAG TTTCTCGATC GTCTCCTTGT CTTCACCTCC
ATAGATGACA AACCAGTTAT GGTCGAGGTA TTCAAGAGGA GACTCCTGAA CAAGGAGATA
CTTTCAATCT GCCTATTATG CGGTTGGAAC TCCAGGGTGA AGGTATCCGA TGTCCCAGAG
AGATGCCCCA AATGCGGGTC GGTGTTCATT ACCTCAACCT TTCCAGATGA CAGGGAAGCT
CTCGATATCG TGAAGAGAAA CATAAGGGGA GAAAAGCTCA ACAGAAAGGA ACAGAAAAGG
CTCTCAGAGC TAAAGTCCAT AGCCTCGCTT TACTCGAATT ATGGAAGGAC AGCCTTTCTG
GCCCTTGCCG TTAGGGGAAT AGGCCCTACT AACCTAGGCA GAGTCCTGAG GTCCCTCTCC
AAAGGAGAGG ATAAGTTTTA TCAAGCTCTC ATGGAGGAGG AGAGGAAGTT CATCAGGTAC
AGGAAGTACT GGCAGTAA
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| Protein sequence | MSSVSQEFIS RLQSLGYREL TPIQKLAIPS ILKGKHTLVI APTGYGKTEA AIIPVMYQIF
AKGYERISAL YITPLRALNR DLEGRLKSFS QTFGIRVATR HGDNSRKERR EIILNPPDLL
ITTPETLLYL IVDKRVKKLL ANLKWVIIDE LQEMLDQKRG YELSVVLQRL KRISRNPRFI
GLSATISDVE LAKSYLSLDE EVEVAKVDGR KDTEILIETP EPSQEVVDLA VKRGMDPILL
ARLLRLKDVI EKNRPVLIFT NTRETAEFLA NQLQTMFNLR VATHHGSLSK EIRTNMESSF
KAGELDAIVA TSSLELGIDI GTISLVVQYM SPRQTIRLLQ RVGRSGHSLN RKARGLVIPG
NYMYDVLECK AITELSKSYL EPMIKEENPL DVLAHQIAGM VIEGPLLMSD ALEIFRGSPY
FRNLTPELLE AVVEQLEAER VVKREGEVLK PSRRTWKYYY TVNMIPDSNM SYLVINTNTN
SRIGNLDFDF VSILDEDSVF VLGGRLWRVV SIEEGKVFVS PAELKKGDLP SWFGEAIPVE
KEVSMKVYEY LTESFAGRRE IEPELKAKIE SHLSRNYPAL RRDLILVELV NSDLLVIHSP
FGTRGNNTLG SLISAVLSSM GYRTSFRSDP YHVVLTSMVP LDVGVVEDVL GKVKSMDPEY
ASRLLEQQVV NEPEFKWILL IEAQRFGAIE KGTEIKLGHY VLRAYIDTVI GKEAIKEFML
RFHDVSILSI LKGMAWEVVE VPSPSPLAQE FLDRLLVFTS IDDKPVMVEV FKRRLLNKEI
LSICLLCGWN SRVKVSDVPE RCPKCGSVFI TSTFPDDREA LDIVKRNIRG EKLNRKEQKR
LSELKSIASL YSNYGRTAFL ALAVRGIGPT NLGRVLRSLS KGEDKFYQAL MEEERKFIRY
RKYWQ
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