| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0038 |
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| Symbol | rps12P |
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| ID | 5105177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 36782 |
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| End bp | 37222 |
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| Gene Length | 441 bp |
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| Protein Length | 146 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640505932 |
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| Product | 30S ribosomal protein S12P |
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| Protein accession | YP_001190139 |
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| Protein GI | 146302823 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0048] Ribosomal protein S12 |
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| TIGRFAM ID | [TIGR00982] ribosomal protein S23 (S12) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000314149 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.098925 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGGCAGATA AGTCTCCAAA AGGTATATTT GCGGCTAGAA AATTAAAGCT CAGAAGATTA
AAGTTTAGGT GGAGTCAGAG GAAGTTCAAG ACCAGGGTAT TGCAATTAAA GAAGAGATTT
GATCCTTTGC AAGGAGCTCC CATGGCAAGG GGTGTGGTTC TGGAGAAAGT TGGGATAGAG
TCTAGACAAC CCAATTCAGC TGTAAGAAAG TGTGTAAGGG TTCAGCTAGT CAAGAACGGG
AGAGTCGTAA CTGCGTTCGT TCCAGGTGAC GGTGGAGTGA ACTTTATAGA CGAACACGAC
GAGGTGATTA TAGCCGGAAT AGGTGGCACT TTGGGTAGGT CCATGGGTGA TTTGCCCGGA
GTAAGATATA AGGTAATAAT GGTAAACGGA GTCTCCCTTG ATTCGTTGTA CAAGGGGAAG
AAGCAAAAGC CCGTTAGATA A
|
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| Protein sequence | MADKSPKGIF AARKLKLRRL KFRWSQRKFK TRVLQLKKRF DPLQGAPMAR GVVLEKVGIE
SRQPNSAVRK CVRVQLVKNG RVVTAFVPGD GGVNFIDEHD EVIIAGIGGT LGRSMGDLPG
VRYKVIMVNG VSLDSLYKGK KQKPVR
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