| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0030 |
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| Symbol | |
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| ID | 5105169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 25323 |
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| End bp | 27116 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640505924 |
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| Product | translation initiation factor IF-2 |
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| Protein accession | YP_001190131 |
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| Protein GI | 146302815 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00491] translation initiation factor aIF-2/yIF-2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0331491 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCAAAGA CAGAAGTGAG ACTTAGACAG CCAATTGTCG TGGTATTAGG TCATGTTGAT
CACGGTAAGA CTACCCTTTT GGACAAGATT AGGGGAACTG CAGTTGTTAA GAAGGAACCA
GGCGAAATGA CCCAGGAGGT TGGGGCTAGT TTCGTCCCAA GCAGCGTTAT CGAAAAAGTT
GCTCAACCCT TAAAAGGTAT AATCCCCGTG AAGCTTGAGA TTCCTGGATT GCTTTTCATA
GACACTCCAG GTCATGAGCT TTTCTCAAAT TTAAGGAGGA GAGGTGGAAG CGTAGCTGAT
ATTGCAATTC TAGTGGTAGA CATAACAGAA GGATTTCAGA AACAGACCAT AGAATCTATT
GAGATCTTAA AAGATAAGAA GGTACCCTTC CTAGTCGCTG CCAATAAAAT AGACAGGATA
CCTGGATGGA GGCCCATAGA GAACGAAACG TTTACAAAAT CCTTTAGATC TCAATCACAG
AGTGTTCAGA AAGCCCTAGA TAATTATGTA TACAAACTGG TAATGCAGTT GGCAGAAATG
GGCTTTAACG CAGAGAGATT TGACCGAGTA AGGGACTTCA CACGTTACGT ATCCATTGTT
CCAGTTTCTG GGAAGACTGG TGAAGGCTTA CCTGAATTGC TGGCGCTTTT AGCGGGTCTG
ACACAGCAAT ATCTTAAGAC AAGACTAAGG GCAGTGGAAG GACCTGCTAA AGGGGTAATT
CTCGAGGTCA AGGAGGAGCA AGGGTTAGGA CATACTATCG ATGTGATAAT CTATGATGGG
ATACTAAGAA AAAGTGACAC GATAGTTCTG GGCGGAATAA ACGGAGTAAT AGTCACTAAA
ATTAGGAACA TCCTACTACC TGCACCCCTA CAGGATATGA GAATGACTAG ATCAGGTTAT
AGGAGCATAG ATGAAATATC CGCGGCAGCA GGAGTTAAAA TCTCAGCACC GGGCCTTGAG
GAGGCTCTTG CAGGATCCCC CCTATACGTG GCTAACGATG AGGCCAAACT TCAGGAAGCT
AGAAAACTTA TTGAAGAGGA GCTATCTAAG GTGAGGTTTT CTAAAAACTC CACAGGTATA
GTGGTAAAGG CAGATAGCTT AGGATCACTG GAGTCCTTGG TCGCAGGATT CGAAAAAATA
GGAATTCCAG TAAGAGTGGC TGATATAGGC CCAATCACTA AGAGGGATTT GATCGAGGCT
GAGCTCTCAG CCAAGGAGGT TGAGGAGTAC GGAATAATTG CAGCCTTCAG AGTAAAACCC
ATCCCAGGAT TAGACACATC TAAGGTTAAG ATAATTTACA ACGATATAAT CTACCAGTTG
ATAGACGACA CTATCAAATA CATTGAAGAT CTCAGGGAGA GGAGAAAAAG GAGGACCCTG
GATTCCCTTG TGTTACCAGG AAAGATCAAG ATCTTACCGG GATATGTTTT TAGAAGAAGT
GATCCGGCTA TAGTAGGTGT AGAAGTTTTA GGAGGCGTAG TGAGGCCAAA GTATCCCTTG
ATAAGAGAGG ATGGACAGAG AGTGGGAGAG GTCTTAGCTA TTCAGGATAA TAAGAAAAAC
ATTGAGAGAG CCACAAAGGG GATGGAGGTT TCCATGTCAA TAAAAGGAAA CATTATGATA
GGTAGACAGG TCCAGGAGGG AGACGTTCTG TACACCGATG TTCCTCAAGA GGACTTAGAG
ATCCTCTTCA AGAATTATAA GGACTCGATC ACAGAGGATA TGATGGAGGT AATCAAGGAG
CTAATAAAGA TAAAAAAGGC CGAGAATCCC CTCTATGGTA TTTTCATTCA GTGA
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| Protein sequence | MSKTEVRLRQ PIVVVLGHVD HGKTTLLDKI RGTAVVKKEP GEMTQEVGAS FVPSSVIEKV
AQPLKGIIPV KLEIPGLLFI DTPGHELFSN LRRRGGSVAD IAILVVDITE GFQKQTIESI
EILKDKKVPF LVAANKIDRI PGWRPIENET FTKSFRSQSQ SVQKALDNYV YKLVMQLAEM
GFNAERFDRV RDFTRYVSIV PVSGKTGEGL PELLALLAGL TQQYLKTRLR AVEGPAKGVI
LEVKEEQGLG HTIDVIIYDG ILRKSDTIVL GGINGVIVTK IRNILLPAPL QDMRMTRSGY
RSIDEISAAA GVKISAPGLE EALAGSPLYV ANDEAKLQEA RKLIEEELSK VRFSKNSTGI
VVKADSLGSL ESLVAGFEKI GIPVRVADIG PITKRDLIEA ELSAKEVEEY GIIAAFRVKP
IPGLDTSKVK IIYNDIIYQL IDDTIKYIED LRERRKRRTL DSLVLPGKIK ILPGYVFRRS
DPAIVGVEVL GGVVRPKYPL IREDGQRVGE VLAIQDNKKN IERATKGMEV SMSIKGNIMI
GRQVQEGDVL YTDVPQEDLE ILFKNYKDSI TEDMMEVIKE LIKIKKAENP LYGIFIQ
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