| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0025 |
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| Symbol | |
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| ID | 5105164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 23377 |
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| End bp | 23781 |
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| Gene Length | 405 bp |
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| Protein Length | 134 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640505919 |
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| Product | cytidine deaminase |
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| Protein accession | YP_001190126 |
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| Protein GI | 146302810 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0295] Cytidine deaminase |
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| TIGRFAM ID | [TIGR01354] cytidine deaminase, homotetrameric |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00901236 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAGGTGA CAGATCCTTC GGATGAGGAA CTCTTGAATC TGGCTGCAAA CGCAGCCAAA
AATTCCTACT CGCCTTACTC AGGGATAAGG GTAGGGGCGG CATTAGTTGG AGAGAACGGA
GAGGTTATAC TGGGCACTAA CGTGGAGAAC TCGTCCTATG GTTTATCCAT TTGTGCCGAG
AGGGTTGCAG TGTTCACCGC GGTAACGAAG GGTATTAGAA AATTCAAGAA AATCGCTATC
TCCCTTTCTG ATGGGAGCGG GATAATGCCG TGCGGAGCCT GCAGGCAAGT CCTTAGGGAG
TTTGGAAGGG ATATCCTAGT GATAACTAGA GATAAAACTG GGAAAACCAC AACATTTTAT
TTAGATGATC TGTTACCGCA TTCATTTACA TTGAAAGGTG AGTAA
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| Protein sequence | MQVTDPSDEE LLNLAANAAK NSYSPYSGIR VGAALVGENG EVILGTNVEN SSYGLSICAE
RVAVFTAVTK GIRKFKKIAI SLSDGSGIMP CGACRQVLRE FGRDILVITR DKTGKTTTFY
LDDLLPHSFT LKGE
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