Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_0011 |
Symbol | |
ID | 5105027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 7850 |
End bp | 9058 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640505904 |
Product | threonine dehydratase |
Protein accession | YP_001190112 |
Protein GI | 146302796 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1171] Threonine dehydratase |
TIGRFAM ID | [TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.059163 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.133507 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCGAA AAATTCTAGA TGATATATTT AGGGCAAGGG AGAGAATATC TCCCTATATC CATGAGACGC CCGTGGACTA TTCCACTACT TTTTCGAGAA TGACTCAGTC CGAAGTTTAT CTAAAACTGG AGAACCTACA GAAGACTGGC TCATTCAAGG TTAGAGGGGC CTTTAATAAG ATCTTGGAAA TGAAGGAAGA GGAAAGAAAG AGAGGCGTAA TAGCCGTTTC TGCCGGCAAT CACGCCCAGG GTGTAGCCTA TGCTGCAATG ACATTGGGTA TAAAGTCCAC CATTGTTATG CCAGAAACTG CCCCTATCTC CAAGTATAAG GCAACAAAAG GTTACGGCGC CGAGGTAATT CTATACGGGA AGTTCATCCA CGAGAGCATG AAGAAGGCGG AGGAGTTGAT ACGGGAGAGG AACTTGACCC TTGTTCATCC ATACGATGAT CCGTTGATAA TCGCTGGCCA AGGGACAGCT GGGCTTGAGA TGGCAAAGGA GAAACCTGAT GTCGTAATAG TACCCATTGG AGGTGGAGGG TTAATCTCTG GAGTTTCAGT TGCCCTAAAG GGGATTAACC CAAACACTAA GGTGATAGGA GTTCAATCTT TCGCCTCTCC TTCGTTAAAG ATCTCAAAGG AACTTGGAAG GTTAACTGAT ATAGAGCCCT CCTATTCTAT TGCGGACGGA ATCCTGGTTA AGTCCCCTTC TTCCCTCACA TTTGAAATCG TCTCAGAATA TGTAGACGAC ATAGTTCTAG TGGATGATGA CGAGATAGCC TGGGCTATGA TGATGCTTCT GGAAAGGAGC AAGACGGTAG TAGAGCCTGC AGGAGCTGCT CCATTGGCAG CGCTACTTAG CGGTAAAGTT GAGGCTAGAG GGAAGAAAGT TATGGCACTC CTTAGCGGAG GTAATGTAGA TCTGTCCCTT CTGGCGAGGA TAATTGATAA GACATTGTAT AAGACCAAGA GGATTGTTAA GGCAAGGGTA ATAGTTCCGG ACAAACCTGG CTATCTTAAC AAGGTTCTTA ATCACGTAGC CCAAATACGA GGAAATATAA TTGACGTGGT TCACGATAGG GTAAGCAGTG ATGTTTTGCC TGGTTACACA AAAATATATG TCATGTTTGA GGTCGCAGAA CAAGAGGATC TAGGAAAATT CATAGTAAGC CTTCAAAATG AGAATATAGA GGTTAAACTC ATAGAATAG
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Protein sequence | MMRKILDDIF RARERISPYI HETPVDYSTT FSRMTQSEVY LKLENLQKTG SFKVRGAFNK ILEMKEEERK RGVIAVSAGN HAQGVAYAAM TLGIKSTIVM PETAPISKYK ATKGYGAEVI LYGKFIHESM KKAEELIRER NLTLVHPYDD PLIIAGQGTA GLEMAKEKPD VVIVPIGGGG LISGVSVALK GINPNTKVIG VQSFASPSLK ISKELGRLTD IEPSYSIADG ILVKSPSSLT FEIVSEYVDD IVLVDDDEIA WAMMMLLERS KTVVEPAGAA PLAALLSGKV EARGKKVMAL LSGGNVDLSL LARIIDKTLY KTKRIVKARV IVPDKPGYLN KVLNHVAQIR GNIIDVVHDR VSSDVLPGYT KIYVMFEVAE QEDLGKFIVS LQNENIEVKL IE
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