| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0007 |
|---|
| Symbol | |
|---|
| ID | 5105023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 4779 |
|---|
| End bp | 5789 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640505900 |
|---|
| Product | ribosomal RNA methyltransferase NOP2 |
|---|
| Protein accession | YP_001190108 |
|---|
| Protein GI | 146302792 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.138281 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA TTGATTCCTA TCTAAAAAAT AATGATTCGC TCCTTTACAC TTATCGTATC
ACTCCAGATA TAAAAAGAAT TGCTGAGAAG TATGGCTTCC TGGACTACAT GGTTGAGAGG
TACCTTGAAT TTCTAGGAGA AGGGACAGAG GATTTCCTTT CCTCCTGTTC CGTGCCATTG
ACGAAATCCA TAAGGTGCAA TTCTCTAAAG ATAGATTGCG GGAAGCTGGA GAAGCGGTTA
ACTGATAAGG GCTTCTCGCT CAAAAGGATT GAGTGGAGCA GGTTTGGATA CAGGGTGGAA
AAGGTCCCAC CTAGGCCTAC TCTTGGGGCA ACAGTGGAGT ACATGAAGGG TTTCTATTAC
ATTCAGGGAG AGGCTTCCAT GATTCCTCCT GAGGTCCTAT CACCCAAGGA GGGTGAGCTG
GTTCTGGACA TGGCTTCCTC CCCTGGAGGA AAGACCACCC ACATGGCTCA GTTGATGAAT
AACAGGGGGA CAATAGTGGC ACTTGAGAAG AATCCCGCAA GATTAAGAAA AATAAGATCC
AATATCTCTA GGTTGGGAGT ATCCAATGTT GTGCTGTTGT GGATGGGTGG AGAGGATGTC
CCAAAGCTAG GAATCGAGTT TGATAAGATA TTGTTAGATG CACCTTGCTC GGGCGAGGGA
TTAATACCCC TGGATCCTTC CAGGAAAACC AAGACCAAAC CGGAGGATCT GAAAAATTTT
CAGCGAACTC AATTAACACT CCTTGCGTCT GGGTTTAAGG TACTTAAAAG AGGTGGATAT
ATGGTTTACT CAACGTGTAG TATAGCCCCT GAAGAGGATG AGGTAATAGT TGATTTCGCA
GTTAAGTACC TAGGCATGAG GGTTGAGAAG ATACAGGGAA TACCGGGAGA GAGGGGCTTA
ACTAGCTTCA AGGGTCTCTC CTTCTCTCCA GAACTCACCC AATGTCTTAG GATCTATCCT
CATCTGCAAC ACATGGAGGG ATTTTTCGTT TGCCTGCTGA GGAAAGAGTG A
|
|---|
| Protein sequence | MSEIDSYLKN NDSLLYTYRI TPDIKRIAEK YGFLDYMVER YLEFLGEGTE DFLSSCSVPL
TKSIRCNSLK IDCGKLEKRL TDKGFSLKRI EWSRFGYRVE KVPPRPTLGA TVEYMKGFYY
IQGEASMIPP EVLSPKEGEL VLDMASSPGG KTTHMAQLMN NRGTIVALEK NPARLRKIRS
NISRLGVSNV VLLWMGGEDV PKLGIEFDKI LLDAPCSGEG LIPLDPSRKT KTKPEDLKNF
QRTQLTLLAS GFKVLKRGGY MVYSTCSIAP EEDEVIVDFA VKYLGMRVEK IQGIPGERGL
TSFKGLSFSP ELTQCLRIYP HLQHMEGFFV CLLRKE
|
|---|
| |