Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_R0079 |
Symbol | |
ID | 5107305 |
Type | rRNA |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4849579 |
End bp | 4852483 |
Gene Length | 2905 bp |
Protein Length | |
Translation table | |
GC content | 53% |
IMG OID | 640505695 |
Product | 23S ribosomal RNA |
Protein accession | |
Protein GI | |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.175282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.43862 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAAGT GAAGAAGCGC ATACGGTGGA TGCCTTGGCA GTCAGAGGCG ATGAAAGACG TGGTAGCCTG CGAAAAGCTT TGGGGAGTCG GCAAACAGAC TGTGATCCAG AGATCTCTGA ATGGGGGAAC CCACCTAGGA TAACCTAGGT ATCTTGTACT GAATCCATAG GTGCAAGAGG CGAACCAGGG GAACTGAAAC ATCTAAGTAC CCTGAGGAAA AGAAATCAAC CGAGATTCCC TTAGTAGTGG CGAGCGAACG GGGACTAGCC CTTAAGTTGG TTTGAGTGTA GTGGAAGGCT CTGGAAAGTG CCGCCGTAGT GGGTGATAGC CCCGTACACG AAACGCTCTT ATCAATGAAA TCGAGTAGGA CGGGGCACGA GAAACCTTGT CTGAACATGG GGGGACCATC CTCCAAGGCT AAATACTACT GACTGACCGA TAGTGAACCA GTACCGTGAG GGAAAGGCGA AAAGAACCCC GGAGAGGGGA GTGAAATAGA ACCTGAAACC GTATGCGTAC AAGCAGTGGG AGCCCACTTT GTTGGGTGAC TGCGTACCTT TTGTATAATG GGTCAGCGAC TTATATTCAG TGGCGAGCTT AACCGAATAG GGGAGGCGTA GCGAAAGCGA GTCTTAATAG GGCGCTTTAG TCGCTGGGTA TAGACCCGAA ACCGGGCGAT CTATCCATGG GCAGGTTGAA GGTTAGGTAA CACTGACTGG AGGACCGAAC CGACTACCGT TGAAAAGTTA GCGGATGACC TGTGGATCGG AGTGAAAGGC TAATCAAGCT CGGAGATAGC TGGTTCTCCT CGAAAGCTAT TTAGGTAGCG CCTCGTGTAT CACTGCTGGG GGTAGAGCAC TGTTTCGGCT AGGGGGTCAT CCCGACTTAC CAAACCGATG CAAACTCCGA ATACCAGCAA GTGTCAGCAC GGGAGACACA CGGCGGGTGC TAACGTCCGT CGTGAAAAGG GAAACAACCC AGACCGTCAG CTAAGGTCCC AAAGTTATGG TTAAGTGGGA AACGATGTGG GAAGGCTTAG ACAGCTAGGA GGTTGGCTTA GAAGCAGCCA TCCTTTAAAG AAAGCGTAAT AGCTCACTAG TCGAGTCGGC CTGCGCGGAA GATGTAACGG GGCTCAAACC ATACACCGAA GCTACGGGTT CATCCTTTGG ATGAGCGGTA GAGGAGCGTT CTGTAAGCCT GTGAAGGTGA GTTGAGAAGC TTGCTGGAGG TATCAGAAGT GCGAATGCTG ACATGAGTAA CGACAATGGG TGTGAAAAAC ACCCACGCCG AAAGACCAAG GTTTCCTGCG CAACGTTAAT CGACGCAGGG TTAGTCGGCC CCTAAGGCGA GGCAGAAATG CGTAGTCGAT GGGAAACGGG TTAATATTCC CGTACTTCTA GTTACTGCGA TGGAGGGACG GAGAAGGCTA GGCCAGCACG GCGTTGGTTG TCCGTGTTTA AGGTGGTAGG CTGATTTCTT AGGTAAATCC GGGAGATCAA GGCCGAGAGC TGATGACGAG CGTTCTTTTA GAATGCGAAG TGGTTGATGC CATGCTTCCA GGAAAAGCTT CTAAGCTTCA GGTAACTAGG AACCGTACCC CAAACCGACA CAGGTGGTTA GGTAGAGAAT ACCAAGGCGC TTGAGAGAAC TCGGGTGAAG GAACTAGGCA AAATGGCACC GTAACTTCGG GAGAAGGTGC GCCGGTGAGG GTGAAGTATT TACTACGTAA GCCCATGCCG GTCGAAGATA CCAGGCCGCT GCGACTGTTT ATTAAAAACA CAGCACTCTG CAAACACGAA AGTGGACGTA TAGGGTGTGA CGCCTGCCCG GTGCCGGAAG GTTAATTGAT GGGGTTAGCG CAAGCGAAGC TCTTGATCGA AGCCCCGGTA AACGGCGGCC GTAACTATAA CGGTCCTAAG GTAGCGAAAT TCCTTGTCGG GTAAGTTCCG ACCTGCACGA ATGGCGTAAC GATGGCGGCG CTGTCTCCAC CCGAGACTCA GTGAAATTGA AATCGCTGTG AAGATGCAGT GTATCCGCGG CTAGACGGAA AGACCCCGTG AACCTTTACT ATAGCTTTGC ACTGGACTTT GAGCTTGCTT GTGTAGGATA GGTGGGAGGC TTTGAAGTGG GGACGCCAGT TCTCATGGAG CCATCCTTGA AATACCACCC TGGCAACCTT GAGGTTCTAA CTCTGGTCCG TCATCCGGAT CGAGGACAGT GTATGGTGGG TAGTTTGACT GGGGCGGTCT CCTCCCAAAG AGTAACGGAG GAGTACGAAG GTGCGCTCAG ACCGGTCGGA AATCGGTCGT AGAGTATAAA GGCAAAAGCG CGCTTGACTG CGAGACAGAC ACGTCGAGCA GGTACGAAAG TAGGTCTTAG TGATCCGGTG GTTCTGTATG GAAGGGCCAT CGCTCAACGG ATAAAAGGTA CTCCGGGGAT AACAGGCTGA TACCGCCCAA GAGTTCATAT CGACGGCGGT GTTTGGCACC TCGATGTCGG CTCATCACAT CCTGGGGCTG AAGCCGGTCC CAAGGGTATG GCTGTTCGCC ATTTAAAGTG GTACGCGAGC TGGGTTTAGA ACGTCGTGAG ACAGTTCGGT CCCTATCTGC CGTGGACGTT TGAGATTTGA GAGGGGCTGA CCTTAGTACG AGAGGACCGG GTTGGACGAA CCTCTGGTGT TCCGGTTGTC ACGCCAGTGG CACTGCCGGG TAGCTATGTT CGGAAAAGAT AACCGCTGAA AGCATCTAAG CGGGAAACTT GCCTCAAGAT GAGATCTCAC TGGAGCCTTG AGCTCCCTGA AGGGCCGTCG AAGACTACGA CGTTGATAGG TGGGGTGTGT AAGCGCTGTG AGGCGTTGAG CTAACCCATA CTAATTGCCC GTGAGGCTTG ACCATATAAC ACCCA
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Protein sequence | |
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