| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4619 |
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| Symbol | trmE |
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| ID | 5106929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 5068301 |
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| End bp | 5069668 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505889 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001190097 |
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| Protein GI | 146309632 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCACG CCCGAGACAC CATTGCCGCC GTCGCCACCG CCCAGGGTCG CGGTGGCGTG
GGCATTGTGC GTGTGTCCGG ACCGCTTTCC GGGCAGCTGG CCCAGGCCAT CTGCCGACGC
GAGCTGAAAC CGCGTTTCGC TCATCACGGC CCGTTCTATG GCGAGCAGGA ACTGCCGCTG
GACGAAGGCC TGGCGATATA CTTCCCCGGT CCGAATTCCT TCACCGGTGA GGACGTGCTC
GAGCTGCAGG GTCATGGCGG CCCGGTGGTG CTCGACCTGC TGCTGCGCCG TTGCCTGGAG
CTGGGAGCGC GTCTGGCTCG GCCCGGTGAG TTCAGCGAGC GCGCCTTTCT CAACGACAAA
CTCGACCTGG CCCAGGCCGA AGCCATCGCC GACCTGATCG AAGCCAGCTC CGAACAGGCT
GCGCGCAACG CGCTGCGTTC ATTGCAGGGC GAATTCTCCA AACGTGTGCA TGCGCTGACC
GAGTCGCTGA TCCAACTGCG CATCTATGTC GAGGCCGCCA TCGACTTCCC CGAGGAGGAG
ATCGACTTCC TCGCCGATGG CCACGTACTG AGCCAGCTCG ACGGCGTACG CGCCGACTTA
TCCACAGTGC TGCGCGAAGC CGGACAGGGT GCCCTGCTGC GCGACGGCAT GACGGTGGTC
ATCGCCGGCC GGCCCAATGC CGGCAAATCC AGCCTGCTCA ATGCCTTGGC CGGGCGCGAA
GCAGCCATCG TCACCGATAT CGCCGGCACC ACCCGCGATG TGCTGCGTGA ACATATCCAC
ATCGACGGCA TGCCGCTGCA CGTGGTCGAC ACCGCCGGCC TGCGCGACAC CGACGACCAG
GTCGAGCGCA TCGGCGTGGA GCGCGCGCTC AAGGCCATCG GCGAGGCCGA CCGGGTGTTG
CTGGTGGTGG ACTCCACCGC GCCGGAAGCG GCCGATCCCT TTGCCCTGTG GCCGGAGTTC
CTCGAACAGC GCCCGGACCC GGCGCGGGTC ACCCTGATCC GCAACAAGGC CGACCTGTCC
GGCGAGGCGG TCACGCTGCA AACCAGCGCC GATGGCCATG TCACCCTCAG CCTGTCGGCC
AAGTCGGCAG ATGGTCTGGA GCTGCTGCGC GAACACCTGA AAGCCTGCAT GGGTTATCAA
CAGACCGCCG AGAGCGGTTT CAGCGCTCGC CGCCGCCACC TCGAAGCGCT GCATCAGGCC
GAGCAGTACC TCGAGCATGG CCGCAACCAG CTCACCCTGA TGGGCGCCGG CGAGCTGCTG
GCCGAGGATC TGCGCATGGC CCAGCAGGCC CTGGGCGAGA TCACCGGCGC CTTCAGCAGC
GACGACCTGC TGGGACGAAT CTTCTCCAGC TTCTGCATCG GCAAATAG
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| Protein sequence | MNHARDTIAA VATAQGRGGV GIVRVSGPLS GQLAQAICRR ELKPRFAHHG PFYGEQELPL
DEGLAIYFPG PNSFTGEDVL ELQGHGGPVV LDLLLRRCLE LGARLARPGE FSERAFLNDK
LDLAQAEAIA DLIEASSEQA ARNALRSLQG EFSKRVHALT ESLIQLRIYV EAAIDFPEEE
IDFLADGHVL SQLDGVRADL STVLREAGQG ALLRDGMTVV IAGRPNAGKS SLLNALAGRE
AAIVTDIAGT TRDVLREHIH IDGMPLHVVD TAGLRDTDDQ VERIGVERAL KAIGEADRVL
LVVDSTAPEA ADPFALWPEF LEQRPDPARV TLIRNKADLS GEAVTLQTSA DGHVTLSLSA
KSADGLELLR EHLKACMGYQ QTAESGFSAR RRHLEALHQA EQYLEHGRNQ LTLMGAGELL
AEDLRMAQQA LGEITGAFSS DDLLGRIFSS FCIGK
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