| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4609 |
|---|
| Symbol | |
|---|
| ID | 5106919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 5059155 |
|---|
| End bp | 5060699 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640505879 |
|---|
| Product | F0F1 ATP synthase subunit alpha |
|---|
| Protein accession | YP_001190087 |
|---|
| Protein GI | 146309622 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAC TGAATCCTTC CGAAATTAGC GAAATCATCA AGCAGCGCAT TGAGTCGCTT
GATGTAACCG CTCAAGCCCG TAATGAAGGC ACCATCGTCA GCGTTTCCGA CGGTATCGTG
CGCATTTACG GCCTCGCCGA CGTCATGTAC GGCGAGATGA TCGAATTCCC GGGTGGCGTC
TACGGTATGG CCCTGAACCT GGAGCAAGAC TCCGTGGGTG CCGTGGTACT GGGTAGCTAC
CTGACTCTCG CCGAAGGCAT GAGCGCCAAG TGCACCGGCC GCATCCTGGA AGTCCCGGTT
GGTCCGGAAC TGCTGGGCCG CGTTGTCGAC GCACTGGGTA ACCCGATCGA TGGTAAAGGC
CCGATCAACG CCGCCGCTAG CGACGCCGTT GAAAAGGTTG CGCCGGGCGT GATCTGGCGT
AAGTCGGTCG ACCAGCCGGT GCAGACCGGT TACAAGTCGG TCGATGCCAT GATCCCGGTA
GGCCGTGGCC AGCGTGAGCT GATCATCGGT GACCGTCAGA TCGGTAAGAC TGCTCTGGCC
GTCGACGCCA TCATCAACCA GAAAGACAGC GGCATCCGTT GCGTCTACGT CGCCATTGGT
CAGAAGCAAT CGACCATCGC CAACGTGGTG CGCAAGCTGG AAGAAGCTGG CGCCCTGGCC
AACACCATCG TGGTTGCAGC GTCGGCTTCC GAATCCGCTG CGCTGCAGTT CCTGGCTCCT
TACGCCGGCT GCACCATGGG TGAATACTTC CGTGACCGCG GTGAAGATGC CCTGATCGTG
TACGACGACC TGTCCAAGCA GGCCGTTGCC TACCGTCAGA TCTCCCTGCT GCTGCGCCGT
CCGCCAGGCC GTGAAGCCTA CCCGGGCGAC GTGTTCTATC TCCACAGCCG TCTGCTGGAG
CGCGCTTCGC GCGTTTCCGA AGAGTACGTC GAGAAGTTCA CCAATGGCGC CGTGAAGGGC
AAGACTGGCT CGCTGACCGC TCTGCCGATC ATCGAAACCC AGGCCGGTGA CGTTTCCGCG
TTCGTTCCGA CCAACGTGAT TTCGATCACC GACGGTCAGA TCTTCCTGGA ATCGGCCATG
TTCAACTCGG GTATCCGTCC GGCCGTCAAC GCTGGTATCT CGGTATCCCG TGTCGGTGGC
GCGGCTCAGA CCAAGATCAT CAAGAAGCTC TCCGGTGGTA TCCGTACCGC TCTGGCTCAG
TACCGTGAAT TGGCTGCTTT CGCCCAGTTC GCTTCTGACC TGGACGAAGC CACCCGCAAG
CAGCTTGAGC ATGGTCAGCG CGTTACCGAG CTGATGAAGC AGAAGCAGTA TGCGCCGATG
TCCATTGCCG AAATGTCGGT GTCCCTGTAC GCAGCCGAGC GTGGCTTCCT GCAGGACGTC
GAAGTCGCCA AGGTCATCAG CTTCGAGCAG GCTTTGATCG CCTTCTTCAA GCGTGATCAC
GCCGACCTGA TGGCGAAGAT CAACGAGAAA GGTGACTTCA ACGACGAGAT CGACGCTGGC
CTGAAAGCCG GTATCGAGAA GTTCAAGGCC ACCCAAACCT GGTAA
|
|---|
| Protein sequence | MQQLNPSEIS EIIKQRIESL DVTAQARNEG TIVSVSDGIV RIYGLADVMY GEMIEFPGGV
YGMALNLEQD SVGAVVLGSY LTLAEGMSAK CTGRILEVPV GPELLGRVVD ALGNPIDGKG
PINAAASDAV EKVAPGVIWR KSVDQPVQTG YKSVDAMIPV GRGQRELIIG DRQIGKTALA
VDAIINQKDS GIRCVYVAIG QKQSTIANVV RKLEEAGALA NTIVVAASAS ESAALQFLAP
YAGCTMGEYF RDRGEDALIV YDDLSKQAVA YRQISLLLRR PPGREAYPGD VFYLHSRLLE
RASRVSEEYV EKFTNGAVKG KTGSLTALPI IETQAGDVSA FVPTNVISIT DGQIFLESAM
FNSGIRPAVN AGISVSRVGG AAQTKIIKKL SGGIRTALAQ YRELAAFAQF ASDLDEATRK
QLEHGQRVTE LMKQKQYAPM SIAEMSVSLY AAERGFLQDV EVAKVISFEQ ALIAFFKRDH
ADLMAKINEK GDFNDEIDAG LKAGIEKFKA TQTW
|
|---|
| |