| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4606 |
|---|
| Symbol | atpC |
|---|
| ID | 5106916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 5056305 |
|---|
| End bp | 5056739 |
|---|
| Gene Length | 435 bp |
|---|
| Protein Length | 144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640505876 |
|---|
| Product | F0F1 ATP synthase subunit epsilon |
|---|
| Protein accession | YP_001190084 |
|---|
| Protein GI | 146309619 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) |
|---|
| TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATGT CAGTCCACTG CGATATCGTC AGTGCGGAAG AAGAGCTGTT CTCGGGGCTG
GTGGAAATGG TCATCGCCCA CGGTCACCTC GGTGACCTGG GTATCCTGCC GGGCCACACC
CCGCTGCTGA CCGATCTCAA ACCGGGTCCG GTGCGAGTGA TCAAGCAGGG TGGCACCGAG
GAGGTGTTCT ACATCTCCGG TGGCTTCCTG GAAGTTCAGC CGAGCATGGT GAAGGTACTT
GCCGACACCG CTGTTCGCGC CGGCGACCTG GATGAAGCCG CTGCCATCGA GGCGCGCAAG
GCGGCCGAGA AGGCGCTGAG CGAAAAGGGC ACCGAGTTCG ACTATGGCAG TGCAGCAGCA
CGCCTGGCCG AGGCTGCTGC TCAGCTGCGC ACCATCGAAG AGATGCGCAA GAAGTTTGGC
GGCCGCAGCC GCTGA
|
|---|
| Protein sequence | MAMSVHCDIV SAEEELFSGL VEMVIAHGHL GDLGILPGHT PLLTDLKPGP VRVIKQGGTE
EVFYISGGFL EVQPSMVKVL ADTAVRAGDL DEAAAIEARK AAEKALSEKG TEFDYGSAAA
RLAEAAAQLR TIEEMRKKFG GRSR
|
|---|
| |