Gene Pmen_4587 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4587 
Symbol 
ID5106898 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp5035791 
End bp5036840 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content65% 
IMG OID640505858 
Productcobalamin biosynthesis protein CobW 
Protein accessionYP_001190066 
Protein GI146309601 
COG category[R] General function prediction only 
COG ID[COG0523] Putative GTPases (G3E family) 
TIGRFAM ID[TIGR02475] cobalamin biosynthesis protein CobW 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00207896 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACCC TCGCCAAACT GCCAGTCACT ATCGTCACCG GTTTTCTCGG TGCCGGCAAA 
ACCACCCTGC TGCGCCTTCT GCTGGCCAAT GCCGGCGGTC GTCGTATCGC GGTGATCGTC
AACGAGTTCG GCGAGTTGGG CATCGACGGC GAGATCCTCA AGCAGTGCTC CATCGGCTGC
AGCGAGGAGG AGGCCAATGG TCGCGTCTTC GAGCTGGCCA ACGGCTGCCT GTGCTGCACC
GTGCAGGAAG AATTCTTCCC GGTGATGCGC GAGCTGGTGG CACGCCGTGG CGACCTCGAC
CATATCCTGA TCGAAACCAG CGGTCTGGCC CTGCCCAAGC CGCTGGTGCA GGCCTTCAAC
TGGCCGGAAA TCCGCAACGC CTGCACGGTC GACGCGGTGA TCACCGTGGT CGACAGCCCG
GCGGTGGCTG CCGGCACCTT CGCCGCCTTC CCCGATCAGG TGGACGAGCA GCGCAAGCTC
GACCCCAACC TCGACCATGA GTCGCCGCTG CACGAGCTGT TCGCCGACCA GCTGGCCAGC
GCCGACCTGG TCATCCTCAA CAAGGCCGAC CTGCTCGACG CCGAAGCCCT GGCGGCGGTG
CGCGCCGAGG TGGCCGAGGA GCTGCCGCCA GCGGTCAAGG TGATCGAGGC CCATGGTGGT
GATCTGCCCA TCAGCGTGTT GCTGGGCCTG AACAGTGAAA CCGAGCTGCA TATCGACAGC
CGTCGCACCC ACCACGACGA TGAAGACGAA GACCACGATC ACGAAGAATT CGACTCGTTC
CACGTGGAAC TACCGGAAAC CGAGGAGGCG CGCCTGCTGG CTGCGCTGAA GGATGCAGTG
ACCAAGTACG GCATTCTGCG GGTCAAGGGC TTCGCCGCTA TCCCTGGCAA ACCCATGCGT
CTGCTGGTGC AGGGTGTCGG TCAGCGCTTC GACCGCCACT TCGACCGCGC CTGGCAAGCC
GACGAGCAGC GCATCAGCCG CCTGGTGGTG ATCGGCCAGC AGCTCGACCG TGCTGCCATC
GAGGACGAGT TGAAGGCGGC GCTGGCCTGA
 
Protein sequence
MKTLAKLPVT IVTGFLGAGK TTLLRLLLAN AGGRRIAVIV NEFGELGIDG EILKQCSIGC 
SEEEANGRVF ELANGCLCCT VQEEFFPVMR ELVARRGDLD HILIETSGLA LPKPLVQAFN
WPEIRNACTV DAVITVVDSP AVAAGTFAAF PDQVDEQRKL DPNLDHESPL HELFADQLAS
ADLVILNKAD LLDAEALAAV RAEVAEELPP AVKVIEAHGG DLPISVLLGL NSETELHIDS
RRTHHDDEDE DHDHEEFDSF HVELPETEEA RLLAALKDAV TKYGILRVKG FAAIPGKPMR
LLVQGVGQRF DRHFDRAWQA DEQRISRLVV IGQQLDRAAI EDELKAALA