| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4559 |
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| Symbol | |
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| ID | 5107017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4998829 |
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| End bp | 5000856 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505830 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001190038 |
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| Protein GI | 146309573 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGC AGAATCAGGG CATGGGCGCC AGCCCGTCCG ACTGGCCGAA GGCGCTGTTC
GCCGTCGCGC TGCTGTTTTC CATCTTCCAG ATCGTCACCG CCGCCTTCCA TCCGGTGTCC
ACCCAGGTGC TGCGCGCGGT GCACGTCGGC TTCCTGCTGC TGCTGGTGTT CATCAGCATC
CCCGCCTTCG GCGTCAAGCG CCCCTGGCAG CCGCTGGCCT GGCTGCTGGG CCTGGCCGGC
ATGGCCACGG CCATCTACCA GTGGTACTTC GAGGCGGACC TGATCCAGCG CTCGGGTGAC
ATGACCACCA GCGACATGAT CGTCGGCCTG GTCCTCATCG TGCTGGTGTT CGAGGCCGCG
CGGCGGGTCA TGGGCATCGC CCTGCCGATC ATCTGCGCGC TGTTTCTCGC CTACGGCATG
CTCGGCCAGT ACCTGCCGGG CGATCTGATG CACCGCGGCT ACGGCCTCGA CCAGATCGTC
AACCAGCTGG CCTTCGGCAC CGAAGGTCTG TACGGCACGC CGACCTACGT GTCGGCCACC
TACATCTTCC TGTTCATCCT GTTCGGCGCC TTCCTCGAGC AGGCCGGGAT GATCAAGCTG
TTCACCGACT TCGCCATGGG CCTGTTCGGT CACAAGGTCG GCGGCCCGGC CAAGGTGTCG
GTGGTGTCCT CGGCGCTGAT GGGCACCATC ACCGGCTCCG GCGTGGCCAA CGTGGTCACC
ACCGGGCAGT TCACCATCCC GCTGATGAAG CGTTTCGGCT ACCGCCCGGC CTTCGCCGGC
GGGGTCGAGG CGACCTCGTC GATGGGCAGC CAGATCATGC CGCCGATCAT GGGTGCCGTG
GCCTTCATCA TGGCCGAAAC CATCAACGTG CCGTTCTTCG AGGTGGCCAA GGCCGCGCTG
ATCCCGGCGC TGCTGTACTT CGGCTCGGTG TTCTGGATGG TCCACCTGGA GGCCCGTCGC
GCCAACCTGC GCGGCCTGCC CAAGGAGGAA TGCCCGAACC CGTGGAAGGC CGTGCGTGAG
CGCTGGTTCC TGCTGATCCC GCTGTTCATC CTCATCTACC TGCTGTTCTC CGGGCGCACG
CCGCTGTTCT CCGGCACCGT CGGCCTGGCC CTGACCGCCA TGGTTATCCT CGGCTCGGCG
ATCATCCTGC GGGTCTCGTC CAAGGCCATG CGCTTCGCCT TCTGGATCGC CCTGGGTGTG
CTCTGCGCCG GCTTCTTCCA GCTCGGCATC GGCGTGGTGT TCGGCGTCAT CGCGGCGCTG
GTGGCGGTCT GCTGGTTCGT CAAGGGCGGC CGTGACACCC TGATCCTGTG CCTGCACGCG
CTGGTCGAAG GCGCGCGTCA CGCGGTGCCG GTCGGCATCG CCTGCGCCCT GGTCGGGGTG
ATCATCGGCG TGGTGTCGCT GACCGGGGTG GCCTCCACCT TCGCCGGCTA CATCCTTGCC
ATCGGCCAGG ACAACCTGTT CCTCTCGCTG GTGCTGACCA TGCTCACCTG CCTGGTGCTG
GGCATGGGCA TTCCGACCAT CCCCAACTAC ATCATCACCA GTTCGATCGC CGCGCCGGCA
CTGCTGGAGC TGGGCGTGCC GCTGATCGTC TCGCACATGT TCGTCTTCTA CTTCGGCATC
ATGGCCGACC TCACCCCGCC GGTAGCGCTG GCCTGCTTCG CCGCCGCGCC GATCGCCAAG
GAGCGTGGCC TGAAGATCAG TCTGTGGGCG ATACGCATCG CCGTAGCCGG TTTCGTCGTG
CCCTACATGG CGGTCTACTC GCCGGCGCTG ATGCTGCAGG GCGACAGCCT GCTGGCGACC
TTCTACGTGC TGTTCAAGGC GGCGCTGGCC ATCGGCATCT GGGGCGTGGT GTTCACCGGC
TTCCTGCAGG CCAGGCTGGC CTGGTGGGAG CGCATCCTCG GCCTGGCCGC CGGTGCCAGC
CTGATTCTGG CCACGCCGAT CAGTGACGAA ATCGGCTTTG CCCTCAGCGC CATCTTCATC
GCTCAGCACC TGTGGCGCGC CCGTCGCGCC GAGGCGGCGA CGGCGTGA
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| Protein sequence | MSEQNQGMGA SPSDWPKALF AVALLFSIFQ IVTAAFHPVS TQVLRAVHVG FLLLLVFISI
PAFGVKRPWQ PLAWLLGLAG MATAIYQWYF EADLIQRSGD MTTSDMIVGL VLIVLVFEAA
RRVMGIALPI ICALFLAYGM LGQYLPGDLM HRGYGLDQIV NQLAFGTEGL YGTPTYVSAT
YIFLFILFGA FLEQAGMIKL FTDFAMGLFG HKVGGPAKVS VVSSALMGTI TGSGVANVVT
TGQFTIPLMK RFGYRPAFAG GVEATSSMGS QIMPPIMGAV AFIMAETINV PFFEVAKAAL
IPALLYFGSV FWMVHLEARR ANLRGLPKEE CPNPWKAVRE RWFLLIPLFI LIYLLFSGRT
PLFSGTVGLA LTAMVILGSA IILRVSSKAM RFAFWIALGV LCAGFFQLGI GVVFGVIAAL
VAVCWFVKGG RDTLILCLHA LVEGARHAVP VGIACALVGV IIGVVSLTGV ASTFAGYILA
IGQDNLFLSL VLTMLTCLVL GMGIPTIPNY IITSSIAAPA LLELGVPLIV SHMFVFYFGI
MADLTPPVAL ACFAAAPIAK ERGLKISLWA IRIAVAGFVV PYMAVYSPAL MLQGDSLLAT
FYVLFKAALA IGIWGVVFTG FLQARLAWWE RILGLAAGAS LILATPISDE IGFALSAIFI
AQHLWRARRA EAATA
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