| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4524 |
|---|
| Symbol | |
|---|
| ID | 5106982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4961319 |
|---|
| End bp | 4962710 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640505795 |
|---|
| Product | aminotransferase |
|---|
| Protein accession | YP_001190003 |
|---|
| Protein GI | 146309538 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0001] Glutamate-1-semialdehyde aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCA GCGGTATCAG CCCAAGCGCC GTGGAAACTT TCGTCGCCCG GGAGCGCGCG
CGCTTTCTCG AGCGCAATCC TAAGTCCGTG GCCCTGGCCG AGCGCGCCCG TCACTCGCTG
TACGGCGGCG TACCGATGCA CTGGATGGCC GACTGGTCGA CGCCGGTGCC GCTGTTCGTC
GAACGCGCCA AGGGCGCGCG CTTCTTCGAC GTGGACGGTC ACGAGTACAT CGACTTCTGC
CTGGGCGACA CCGGCACCAT GTTCGGCCAC TCGCCGGACC CGGTGGCCCG CGCCCTCGCG
GAGCAGGCCA GTAACGGCCT GACCACCATG CTGCCCGGCG AGGACGCCGT GGTCTGCGGC
GAACTGCTGG CCCAGCGCTT CGGCCTGCCC TACTGGCAGG TGACCGCCAC GGCAACCGAC
TCGAATCGCT ATGTGCTGCG CTGGGCGCGC GCCATCACGC AGCGCAAGAC CCTGCTGGTG
TTCGACGGCT GCTACCACGG CACCGTCGAC GACGTAATGG TGCGCCATCG CGATGGCGAG
ACCGTGCACC GCTCGGGCCT GGTCGGCCAG GCCTACGACC TGACCGAGCA CAGCCGCGCC
ATTCCCTTCA ACGATGTCGC CGCGCTGGAA GCGGCGCTGG CCCAAGGCGA CGTCTGCGCC
CTGCTCTGCG AGCCGGCGAT GACCAACATC GGCATGGTGC TGCCCGATCC GGGCTTCATG
CAGAAATGCC GCGAACTGAC GCGCCAGTAC GGCAGCCTGC TGATCATCGA CGAAACCCAC
ACCATCTCCA CCGATATCGG CGGCTGCACC AGGCTGTGGA ACCTCGACCC GGACTTCTTC
GTGGTCGGCA AGCCCATCGC CGGTGGCGTG CCGTGCGGCA TCTTCGGCTG CAGCGCAGAG
ATGGCAGGCG CCATGACCAA GGCGCGCCAG CGCGCCAGCG AAGACAGCCA CGGTCACGGC
CACAGCGGCA TGGGCACCAC CCTGTCGGCC AACGCCCTGG CCATGCACTG CATGCGCGCC
AACCTGGAGC AGGTGATGAC CCAGGCGGCC TACGACCATA TGCTGCCGCT GGCCGCACGC
CTGGCCGAAG GCTTCCGCCG GCTGATCGGC AAGCACGAGC TGAAGTGGTC GGTGACCGAA
CTGGGCGCGC GCTGCGAATT CCAGTTCTGC GCCACCCCGC CGCGCACCGG CGCCGAGGCC
GAGGCGGCGT TCCATGACGA GCTGCAGATG GCCCTGCACC TGTACCTGAT CAACCGCGGC
ATCCTGATCA CCCCGTTCCA CAATATGACC CTGTGCTGCC CGAGCACCAC GGCCGAAGAT
GTGGACAAGC TGATCGCCAC CCTGGATCAG GGCCTGAGCG AGCTGCTGGT CATTCCCGGC
GCCCGCGAAT AG
|
|---|
| Protein sequence | MTASGISPSA VETFVARERA RFLERNPKSV ALAERARHSL YGGVPMHWMA DWSTPVPLFV
ERAKGARFFD VDGHEYIDFC LGDTGTMFGH SPDPVARALA EQASNGLTTM LPGEDAVVCG
ELLAQRFGLP YWQVTATATD SNRYVLRWAR AITQRKTLLV FDGCYHGTVD DVMVRHRDGE
TVHRSGLVGQ AYDLTEHSRA IPFNDVAALE AALAQGDVCA LLCEPAMTNI GMVLPDPGFM
QKCRELTRQY GSLLIIDETH TISTDIGGCT RLWNLDPDFF VVGKPIAGGV PCGIFGCSAE
MAGAMTKARQ RASEDSHGHG HSGMGTTLSA NALAMHCMRA NLEQVMTQAA YDHMLPLAAR
LAEGFRRLIG KHELKWSVTE LGARCEFQFC ATPPRTGAEA EAAFHDELQM ALHLYLINRG
ILITPFHNMT LCCPSTTAED VDKLIATLDQ GLSELLVIPG ARE
|
|---|
| |