Gene Pmen_4512 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4512 
Symbol 
ID5106970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4946347 
End bp4949229 
Gene Length2883 bp 
Protein Length960 aa 
Translation table11 
GC content68% 
IMG OID640505783 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001189991 
Protein GI146309526 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCA CCACCAGCGC CGTAGTACAC GAGGTGACGC CGGACCCGCA TCAGGCCGAA 
CGCCAGTTCG CCGCGGACAT CGCCGTCGAG CGCACCCGTC TGCTCTATCA GGGCTCGCGC
CTGCCCACCC TGTTGATGTT GCTGGTCGGC CTGGCCTGCA GCCTGCTGCT GTGGCGCGAG
GGCAGCGCGC CGCTGCTCGC CGGCTGGCTG GCCTGGGTGC TGTTGCTGGT GCTGCTGCGC
CTGACCCAAG TGAATGCCTT CAATGCGGCG CTGCCCAGTC GCCAGGCCGA ATCCTATTGG
CGGCGCAACT TTCTCTTCGG CGCCGGCGCT TCGGGGCTGA CCCTGGCCTT CGCGGTGATC
GTGCTGGTGC CGCCGGATGT GTTCTACCAG CAGGCCCTGG TCTATGGCCT GATCGCCGCG
GCGATCCTCT CGGCCAGCGT CGCCTATGCC GTCAGCCTGT CGGCCTTTCT CACCTTCGCC
CTGCCCTGTC TGTTGCCCTC GGCAGCCTTT CTGCTGCTCA GTGACAACAG CCTGCAGCGC
GGCTGGGGGC TGCTCAGCGT CATCCTCTTT CTCGCCCTGC TGGTGGTGGC CTGGCAGGTC
AACCGTCTGG TGCAGCGCAG CCTGCTGCAG CGCTTTCACA ACCAGGCGCT GATCGCCAAC
CTGGAACATG CCAAGCAGCG TGCCGAAGGT CTCAACGAGG AGCTGGCGCG CGAGGTGGAG
CAGCGCCGCC GGGCCGAGCG CGAGTTGCGC GGCGCCCATG GCGAACTGGA GATGCGCGTG
GCCGAGCGCA CCCTGGAGCT GGACGAGGCG ACCCACGCCC TGGGCAAGAG CCAGGCGCGC
CTGGCCCTGG CGCTGGAGGC CAGCGAGCTG GGGCTGTGGG ACTGGGACCT GGAGAGCGAT
CAGGTGCACC ATTCGCACCT GCGCGAACTG TTCGGCCTGG AGCCGGAGCA GGTTCAGGTG
ATGCTGCGCG ACCTGACCCC GCGCCTGCAT CCGGATGACC TGCCGCGCCT GCGCCGGGCG
CTGGTGGAGC ACATGAAGGG GCGCAGCGAG GACTATCAGA TCGAATACCG CGTGCGCCAC
GTCGACGGCC ACTGGGTCTG GGTCGAGGAC CGTGGCCGCG CGGTCGAACG CGACGCCGCC
GGCCGTGTGC GGCGCATGCT CGGCACCCGC CGCGACGTCA GCGCGCGGCG CCAGCAGGAG
CAGGAGCAGC GCCTGGCTGC GACGGTGTTC GAGGCGGCCA GCGAGGGCAT CTTCATTCTC
GACCCCGATT ACCGCGTGCT GGCGGTCAAC CGCGCCTTCA GTGCGGTGAC CGGCTACAGC
CGTGAGGAAG TGGTGGGGCG CACGGTGACC AGCCTGATCG GCAGCCGCGA GATGCGCAGG
CAGTACCAGA TGATCCGCCA GGAGCTGGAC GGCAGCGGCA GTTGGCAGGG CGAGCTGATC
GAGACACGCA AGAGCGGCGA ACTCTACCCG CAGTGGCTGC AGCTGAACCT GGTGCGCGAT
GCCAGCGGGC GGCCCAGCCA TATCGTCGGC TTCTTCGCCG ACCTGACCGC GCGGCGCGAG
GCCGAGGAGC GCCTGCGCTA CCTGTCGCAT TACGACGAAC TCACCGGCCT GGCCAACCGC
AGCCTGTTCA AGGAGCGCCT GCACGAGGCC AGCCAGCGCG CCCGGCAGAG CGGGCGCAGC
ATCGCCCTGG TGCATATCGA CCTGGACCGC TTCAAGCTGC TCAACGACAG CCTCGGCCAT
GAGGTGGCCG ACCAGCTGCT GCGCCAGATG AGCCGCCGAC TGACCCAGGC AGTGCCCGAG
GCCGACTGCA TCGCGCGGCT GTCGGGCGAC GAATTCGCCA TCCTTCTCGA TGCCTACGGC
AGCCTCTCCA GCCTGGCGCG GGTGGCCAGC CGGTTGCTGG CCAAGCTGCG ACTACCGATG
GACGTCGGCG GCCACGAGCT GGTGGTCAGC GCCTCGCTGG GCATCAGCCT GCTGCCGGAC
TATGCGCGCG AGATCGGCGC GCTGATCAGC CAGGCCAACA TGGCCGTGCA GCATGCCAAG
CACCTGGGCG GCAACACCTT CCAGTTCTTC ACCGACAACC TGCAGGCCTG CACCCTGGAG
CGCCTGCAAC TGGAAAACCA GTTGCGCAAG GCCATCGAGG AGGGCCAGCT GGAGGTGTTC
TACCAGCCCA AGCTGAACCT CGCCGACGAC CAGCTCAATG CCGCCGAAGC CCTGGTGCGC
TGGCGCCATC CGCAGCAGGG GCTGGTGGCG CCGGGCGAGT TCATCGGCCT GGCCGAGGAG
ACCGGGCTGA TCGCGCCGAT CGGCGAGTTC GTCCTGCGCC AGGCCTGCCG CCAGGCGCGC
CAGTGGCAGC AGCAGGGGCT GGCGGAGATC CGCGTATCGG TGAACATCTC GGTGTATCAG
CTGCGCCAGG GCAACCTCAC CAGCCTGGTG CGCCAGGTGC TGGAAGAAAC CGGCCTGGCC
CCGCAGTACC TGGAGCTGGA GTTGACCGAG AGCCAGCTGC TGGACAACGT CGACAGCGTC
GTCGTCACCT TCCGCCAGCT GCGCGAACTG GGGGTGAAGC TGGCCATCGA CGATTTCGGC
ACCGGCTACA GCTCGCTCAG CTACCTCAAG CGTTTCCCGG TGCACTACGT GAAGATCGAC
CAGACCTTCA TCCGCGACCT GTCGCCGGGC GGCGAGGATG CGGCGATCAC CCGCGCCATC
ATCGCCATGG CGCACAGCCT GGAGTTGAAG GTGGTGGCCG AGGGCGTGGA AACCCAGGCG
CAGATGGATT TTCTCAAGAG TCAGAACTGC GACGAGATCC AGGGCTACCT GATCAGCCGG
CCGGTGGAGG CCGCGGCCTT CGCCGAGCTG TTGCGTGCGC AGCGCGACGA TCCGCTGGAC
TGA
 
Protein sequence
MTATTSAVVH EVTPDPHQAE RQFAADIAVE RTRLLYQGSR LPTLLMLLVG LACSLLLWRE 
GSAPLLAGWL AWVLLLVLLR LTQVNAFNAA LPSRQAESYW RRNFLFGAGA SGLTLAFAVI
VLVPPDVFYQ QALVYGLIAA AILSASVAYA VSLSAFLTFA LPCLLPSAAF LLLSDNSLQR
GWGLLSVILF LALLVVAWQV NRLVQRSLLQ RFHNQALIAN LEHAKQRAEG LNEELAREVE
QRRRAERELR GAHGELEMRV AERTLELDEA THALGKSQAR LALALEASEL GLWDWDLESD
QVHHSHLREL FGLEPEQVQV MLRDLTPRLH PDDLPRLRRA LVEHMKGRSE DYQIEYRVRH
VDGHWVWVED RGRAVERDAA GRVRRMLGTR RDVSARRQQE QEQRLAATVF EAASEGIFIL
DPDYRVLAVN RAFSAVTGYS REEVVGRTVT SLIGSREMRR QYQMIRQELD GSGSWQGELI
ETRKSGELYP QWLQLNLVRD ASGRPSHIVG FFADLTARRE AEERLRYLSH YDELTGLANR
SLFKERLHEA SQRARQSGRS IALVHIDLDR FKLLNDSLGH EVADQLLRQM SRRLTQAVPE
ADCIARLSGD EFAILLDAYG SLSSLARVAS RLLAKLRLPM DVGGHELVVS ASLGISLLPD
YAREIGALIS QANMAVQHAK HLGGNTFQFF TDNLQACTLE RLQLENQLRK AIEEGQLEVF
YQPKLNLADD QLNAAEALVR WRHPQQGLVA PGEFIGLAEE TGLIAPIGEF VLRQACRQAR
QWQQQGLAEI RVSVNISVYQ LRQGNLTSLV RQVLEETGLA PQYLELELTE SQLLDNVDSV
VVTFRQLREL GVKLAIDDFG TGYSSLSYLK RFPVHYVKID QTFIRDLSPG GEDAAITRAI
IAMAHSLELK VVAEGVETQA QMDFLKSQNC DEIQGYLISR PVEAAAFAEL LRAQRDDPLD