Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4512 |
Symbol | |
ID | 5106970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4946347 |
End bp | 4949229 |
Gene Length | 2883 bp |
Protein Length | 960 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640505783 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001189991 |
Protein GI | 146309526 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCA CCACCAGCGC CGTAGTACAC GAGGTGACGC CGGACCCGCA TCAGGCCGAA CGCCAGTTCG CCGCGGACAT CGCCGTCGAG CGCACCCGTC TGCTCTATCA GGGCTCGCGC CTGCCCACCC TGTTGATGTT GCTGGTCGGC CTGGCCTGCA GCCTGCTGCT GTGGCGCGAG GGCAGCGCGC CGCTGCTCGC CGGCTGGCTG GCCTGGGTGC TGTTGCTGGT GCTGCTGCGC CTGACCCAAG TGAATGCCTT CAATGCGGCG CTGCCCAGTC GCCAGGCCGA ATCCTATTGG CGGCGCAACT TTCTCTTCGG CGCCGGCGCT TCGGGGCTGA CCCTGGCCTT CGCGGTGATC GTGCTGGTGC CGCCGGATGT GTTCTACCAG CAGGCCCTGG TCTATGGCCT GATCGCCGCG GCGATCCTCT CGGCCAGCGT CGCCTATGCC GTCAGCCTGT CGGCCTTTCT CACCTTCGCC CTGCCCTGTC TGTTGCCCTC GGCAGCCTTT CTGCTGCTCA GTGACAACAG CCTGCAGCGC GGCTGGGGGC TGCTCAGCGT CATCCTCTTT CTCGCCCTGC TGGTGGTGGC CTGGCAGGTC AACCGTCTGG TGCAGCGCAG CCTGCTGCAG CGCTTTCACA ACCAGGCGCT GATCGCCAAC CTGGAACATG CCAAGCAGCG TGCCGAAGGT CTCAACGAGG AGCTGGCGCG CGAGGTGGAG CAGCGCCGCC GGGCCGAGCG CGAGTTGCGC GGCGCCCATG GCGAACTGGA GATGCGCGTG GCCGAGCGCA CCCTGGAGCT GGACGAGGCG ACCCACGCCC TGGGCAAGAG CCAGGCGCGC CTGGCCCTGG CGCTGGAGGC CAGCGAGCTG GGGCTGTGGG ACTGGGACCT GGAGAGCGAT CAGGTGCACC ATTCGCACCT GCGCGAACTG TTCGGCCTGG AGCCGGAGCA GGTTCAGGTG ATGCTGCGCG ACCTGACCCC GCGCCTGCAT CCGGATGACC TGCCGCGCCT GCGCCGGGCG CTGGTGGAGC ACATGAAGGG GCGCAGCGAG GACTATCAGA TCGAATACCG CGTGCGCCAC GTCGACGGCC ACTGGGTCTG GGTCGAGGAC CGTGGCCGCG CGGTCGAACG CGACGCCGCC GGCCGTGTGC GGCGCATGCT CGGCACCCGC CGCGACGTCA GCGCGCGGCG CCAGCAGGAG CAGGAGCAGC GCCTGGCTGC GACGGTGTTC GAGGCGGCCA GCGAGGGCAT CTTCATTCTC GACCCCGATT ACCGCGTGCT GGCGGTCAAC CGCGCCTTCA GTGCGGTGAC CGGCTACAGC CGTGAGGAAG TGGTGGGGCG CACGGTGACC AGCCTGATCG GCAGCCGCGA GATGCGCAGG CAGTACCAGA TGATCCGCCA GGAGCTGGAC GGCAGCGGCA GTTGGCAGGG CGAGCTGATC GAGACACGCA AGAGCGGCGA ACTCTACCCG CAGTGGCTGC AGCTGAACCT GGTGCGCGAT GCCAGCGGGC GGCCCAGCCA TATCGTCGGC TTCTTCGCCG ACCTGACCGC GCGGCGCGAG GCCGAGGAGC GCCTGCGCTA CCTGTCGCAT TACGACGAAC TCACCGGCCT GGCCAACCGC AGCCTGTTCA AGGAGCGCCT GCACGAGGCC AGCCAGCGCG CCCGGCAGAG CGGGCGCAGC ATCGCCCTGG TGCATATCGA CCTGGACCGC TTCAAGCTGC TCAACGACAG CCTCGGCCAT GAGGTGGCCG ACCAGCTGCT GCGCCAGATG AGCCGCCGAC TGACCCAGGC AGTGCCCGAG GCCGACTGCA TCGCGCGGCT GTCGGGCGAC GAATTCGCCA TCCTTCTCGA TGCCTACGGC AGCCTCTCCA GCCTGGCGCG GGTGGCCAGC CGGTTGCTGG CCAAGCTGCG ACTACCGATG GACGTCGGCG GCCACGAGCT GGTGGTCAGC GCCTCGCTGG GCATCAGCCT GCTGCCGGAC TATGCGCGCG AGATCGGCGC GCTGATCAGC CAGGCCAACA TGGCCGTGCA GCATGCCAAG CACCTGGGCG GCAACACCTT CCAGTTCTTC ACCGACAACC TGCAGGCCTG CACCCTGGAG CGCCTGCAAC TGGAAAACCA GTTGCGCAAG GCCATCGAGG AGGGCCAGCT GGAGGTGTTC TACCAGCCCA AGCTGAACCT CGCCGACGAC CAGCTCAATG CCGCCGAAGC CCTGGTGCGC TGGCGCCATC CGCAGCAGGG GCTGGTGGCG CCGGGCGAGT TCATCGGCCT GGCCGAGGAG ACCGGGCTGA TCGCGCCGAT CGGCGAGTTC GTCCTGCGCC AGGCCTGCCG CCAGGCGCGC CAGTGGCAGC AGCAGGGGCT GGCGGAGATC CGCGTATCGG TGAACATCTC GGTGTATCAG CTGCGCCAGG GCAACCTCAC CAGCCTGGTG CGCCAGGTGC TGGAAGAAAC CGGCCTGGCC CCGCAGTACC TGGAGCTGGA GTTGACCGAG AGCCAGCTGC TGGACAACGT CGACAGCGTC GTCGTCACCT TCCGCCAGCT GCGCGAACTG GGGGTGAAGC TGGCCATCGA CGATTTCGGC ACCGGCTACA GCTCGCTCAG CTACCTCAAG CGTTTCCCGG TGCACTACGT GAAGATCGAC CAGACCTTCA TCCGCGACCT GTCGCCGGGC GGCGAGGATG CGGCGATCAC CCGCGCCATC ATCGCCATGG CGCACAGCCT GGAGTTGAAG GTGGTGGCCG AGGGCGTGGA AACCCAGGCG CAGATGGATT TTCTCAAGAG TCAGAACTGC GACGAGATCC AGGGCTACCT GATCAGCCGG CCGGTGGAGG CCGCGGCCTT CGCCGAGCTG TTGCGTGCGC AGCGCGACGA TCCGCTGGAC TGA
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Protein sequence | MTATTSAVVH EVTPDPHQAE RQFAADIAVE RTRLLYQGSR LPTLLMLLVG LACSLLLWRE GSAPLLAGWL AWVLLLVLLR LTQVNAFNAA LPSRQAESYW RRNFLFGAGA SGLTLAFAVI VLVPPDVFYQ QALVYGLIAA AILSASVAYA VSLSAFLTFA LPCLLPSAAF LLLSDNSLQR GWGLLSVILF LALLVVAWQV NRLVQRSLLQ RFHNQALIAN LEHAKQRAEG LNEELAREVE QRRRAERELR GAHGELEMRV AERTLELDEA THALGKSQAR LALALEASEL GLWDWDLESD QVHHSHLREL FGLEPEQVQV MLRDLTPRLH PDDLPRLRRA LVEHMKGRSE DYQIEYRVRH VDGHWVWVED RGRAVERDAA GRVRRMLGTR RDVSARRQQE QEQRLAATVF EAASEGIFIL DPDYRVLAVN RAFSAVTGYS REEVVGRTVT SLIGSREMRR QYQMIRQELD GSGSWQGELI ETRKSGELYP QWLQLNLVRD ASGRPSHIVG FFADLTARRE AEERLRYLSH YDELTGLANR SLFKERLHEA SQRARQSGRS IALVHIDLDR FKLLNDSLGH EVADQLLRQM SRRLTQAVPE ADCIARLSGD EFAILLDAYG SLSSLARVAS RLLAKLRLPM DVGGHELVVS ASLGISLLPD YAREIGALIS QANMAVQHAK HLGGNTFQFF TDNLQACTLE RLQLENQLRK AIEEGQLEVF YQPKLNLADD QLNAAEALVR WRHPQQGLVA PGEFIGLAEE TGLIAPIGEF VLRQACRQAR QWQQQGLAEI RVSVNISVYQ LRQGNLTSLV RQVLEETGLA PQYLELELTE SQLLDNVDSV VVTFRQLREL GVKLAIDDFG TGYSSLSYLK RFPVHYVKID QTFIRDLSPG GEDAAITRAI IAMAHSLELK VVAEGVETQA QMDFLKSQNC DEIQGYLISR PVEAAAFAEL LRAQRDDPLD
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