| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4488 |
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| Symbol | |
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| ID | 5107183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4920544 |
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| End bp | 4922652 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640505759 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001189967 |
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| Protein GI | 146309502 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGCCC AGGCCAACCA GACCCATTTC AGCCTCAGCA TCGAGGGTGT CGAACACGAC
CTGCAGGTGC TCGAGTTTAA AGGGCGCGAG GCGATCAGCC AGCCTTACGC CTTCGACGTG
GAACTGATCA GCGAACGCCC CGACCTCGAT CTGGAGAGCC TGCTGCACCA GCGCGCCTTC
CTCGCCTTCG ACCAGAACGG CGCCGGCATC CACGGCCTTA TCCACCGCAT CGCCCAGGGC
GAATCCGGCA AGCGCATGAC GCGCTACCGC CTGACCCTGG TGCCGCAACT GGCCTACCTG
GCGCACCGCA CCAACCAGCG CATCTTCCAG CACCTGACGG TGGAGAAGAT CATCACTCAG
GTGCTCGAGG AACACGGCAT CCAGGCCGAT GCCTATCAGT TCCAGCTCGG CTCGCTCTAC
CCCGAGCGCG AATACTGCGT GCAGTACGAC GAGAGCGACC TGCACTTCGT CCAGCGCCTG
TGCGAGGAGG AAGGCATCCA CTACCACTTC CAACACAGCA GCGATGGCCA TGTACTGACC
TTCGGCGACG ACCAGACCGT GTTCCCGCGT CTGGCACCGC TGGCCTACCA GCAGGACACC
GGCCTGGTGG CCGACGACCC GGTGATCAAG CATTTCGGCG TGCGCGTGGA AACCCGCACC
AGCCAGGTCA CCCGCCGCGA CTACGACTTC GAGAAACCGC GGCTTCAGCT GGAAGCCAAG
GCCGACAGCG ACGCCCAGCC CAAGCTGGAA GACTACGACT ACCCGGGCCG CTACACCGAC
CGCGAACGCG GCAAGCACCT GGCCAAGCGC GCCCTGGAGC GCCACCGCCA CGACTTCGAA
CTGGCCCAGG GCGACGGCGA CTCGCCGACC CTGGTCAGCG GCCACTTCCT CGACCTGACC
GACCATCCGC GCGAGGCATG GAACCAGCTC TGGCTGCTGA CCGAAGTGCT GCACGAAGGC
AAGCAACCGC AGGTGCTGGA GGAGTCGATC ACCAGTGATT CAGCCCTGCG CCGAACAGCT
CCCTCGCCCC TCCGGGGAGA GGGCCGGGGA GAGGGGGATA AGAGCGCCGC CGACTTCCAC
CAAGGCTACC GCAACCGCTT CACCGCCACG CCCTGGAACG TGCCCTACCG TCCCCAGTTG
GCCCACCCCA AGCCGCGCAT ACTCGGCAGC CAGAGCGCCG TGGTCACGGG ACCGGCCGGC
GAAGAAATCC ACTGCGACCA ATATGGCCGG GTGAAGGTGC AGTTCTTCTG GGATCGCGAA
GGTCAGGCTG ATGAGAAAAC CAGCTGCTGG CTGCGCGTCA GCTCCAGCTG GGCTGGCGAT
CGCTACGGCG CCATCACCAT CCCGCGTATC GGCATGGAAC TGCTGGTCAC CTTCCTCGAA
GGCGACCCCG ACCAGCCCCT GGTCACCGGC TGCCTGTACC ACGCCGAACA CGTCGTGCCC
TACGACCTGC CTGCGAACAA GACTCGCAGC GTGTTCAAGA CCCTGAGCAG CCCCGGCGGT
GGCGGCTACA ACGAACTGCG CATCGAAGAC CGCAAGGGCG CCGAGCAGAT CTACATCCAC
GCCCAGCGCG ACTGGGACGA GAACATCGAG CACAACCAGA AGATCCGCGT CGGCAACGAG
CGCCACGACA CCGTCGAGGC CAACGCCTAC AGCCACTTCA AGGCCGAAGA ACACCGCACC
ACCCACGCCG AACGCAAGAC CGAGATCAAG GCCAACGACC ACCTCACCGT CGGCGACAGC
CAGCACATCA AACTGGGCAA CGGCCAGTTC ATCCAGGCCG GCAGCGAGAT CCATCTATCC
AGCGGCCTGA AAGTCGTGCT TGAAGCCGGC AGCGAACTGA CCCTCAAGGG CGGCGGCAGC
TTTATCAAAC TCGACGGCGG CGGCATCACC CTGGTCGGCC CGGTGATCAA GATCAACTCC
GGCGGCGCGC CGGGCAGTGG TTCGGGGGCG GCGCCAGTGT TGCCGGGCGC GGCGAAGCCG
GCGGATGCGG ATAAGGCGGG TATGGTTACT AAAAACTACC GCGTGCAAGC ACTAGCAGGG
CATCTACTGC CAGCTTTGGG CTGCATATTT GACGCCAGTG GCAAATGCAT GATTCACAAT
CACGGATGA
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| Protein sequence | MFAQANQTHF SLSIEGVEHD LQVLEFKGRE AISQPYAFDV ELISERPDLD LESLLHQRAF
LAFDQNGAGI HGLIHRIAQG ESGKRMTRYR LTLVPQLAYL AHRTNQRIFQ HLTVEKIITQ
VLEEHGIQAD AYQFQLGSLY PEREYCVQYD ESDLHFVQRL CEEEGIHYHF QHSSDGHVLT
FGDDQTVFPR LAPLAYQQDT GLVADDPVIK HFGVRVETRT SQVTRRDYDF EKPRLQLEAK
ADSDAQPKLE DYDYPGRYTD RERGKHLAKR ALERHRHDFE LAQGDGDSPT LVSGHFLDLT
DHPREAWNQL WLLTEVLHEG KQPQVLEESI TSDSALRRTA PSPLRGEGRG EGDKSAADFH
QGYRNRFTAT PWNVPYRPQL AHPKPRILGS QSAVVTGPAG EEIHCDQYGR VKVQFFWDRE
GQADEKTSCW LRVSSSWAGD RYGAITIPRI GMELLVTFLE GDPDQPLVTG CLYHAEHVVP
YDLPANKTRS VFKTLSSPGG GGYNELRIED RKGAEQIYIH AQRDWDENIE HNQKIRVGNE
RHDTVEANAY SHFKAEEHRT THAERKTEIK ANDHLTVGDS QHIKLGNGQF IQAGSEIHLS
SGLKVVLEAG SELTLKGGGS FIKLDGGGIT LVGPVIKINS GGAPGSGSGA APVLPGAAKP
ADADKAGMVT KNYRVQALAG HLLPALGCIF DASGKCMIHN HG
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