| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4445 |
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| Symbol | |
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| ID | 5107140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4872973 |
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| End bp | 4875531 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505716 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001189924 |
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| Protein GI | 146309459 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGACA AGCAACTTTC CACCGAGGAA CTGATCGCCC AGGACGTCGG CGCGCGCACG
CCCGTCGGCG CCATGGCCCA GGTGATCGCC GGCCTGGCCT TGCTCTGGTC GCTGTTCCAG
CTGTGGATCG CCTCGCCGCT GCCCTTCGTG TTCGGCTTCG GTGTGTTCAA CGACACCCAG
ACCCGCGCCA TCCACCTGAC CTTCGCCCTG CTGCTGGCCT TCCTCGCCTA CCCGGCATTC
AGGAAGTCGC CGCGCGATCG CGTGCCGCTG CTGGATATCG CCCTCGGCCT GATCGCCGCC
GCCTGCTCGG CCTACCTGTT CGTGATGTAC CAGCAACTGG CGATGCGCCC GGGCAGCCTG
ACCACCACCG ACCTGGTCAC CGCCTGCATC GGCATCCCGC TGCTGCTGGA AGCCACCCGC
CGCGCGCTCG GCCCGGCTCT GGCGGTGATC GCCCTGGTGT TTCTCGTCTA CAGCCTGGCC
GGCCCCTGGA TGCCTGGCAT GCTGGCGCAC CGTGGGGTGA GCCTGAATGC GCTGGCCAAT
CACCAGTGGA TCACCACCGA AGGGGTGTTC GGCATCGCCC TCGGCGTGTC CACCAGCTTC
GTCTTCCTCT TCGTATTGTT TGGCGCCCTG CTCGAGCGGG CCGGCGCCGG GCACTATTTC
ATCCAGCTGG CCTTCAGCCT GCTCGGCCAC CTGCGCGGCG GCCCGGCCAA GGCCGCCGTG
GTGGCCTCGG GCATGACCGG GCTGATCTCC GGCTCGTCGA TCGCCAACAC CGTGACCACC
GGCACCTTCA CCATCCCGAT GATGAAGCGC ACCGGCTTCT CGTCGGAGAA GGCCGGCGCG
GTGGAGGTGG CCTCCTCGGT CAACGGCCAG ATCATGCCGC CGGTGATGGG CGCCGCCGCC
TTCCTCATGG TCGAGTACGT CGGCATCCCC TACATCGAGG TGATCAAGCA CGCCTTCCTG
CCGGCGCTGA TTTCCTATAT CGCGCTGATC TACATCGTCC ACCTGGAGTC GATGAAGCTC
GGCCTCAAGC CCATCGGCGG CCACCAGCCC AAGCCTTGGC TGCGCCGCCT GACCGGCTTC
GCCTTCGGCG CGGCGCTGAT CAGCGGCCTT TCGCTGGGCG TCTACTACGG CCTCGGCTGG
CTCAAGCCGG CCCTTGGCGA CGCCGCCATC TGGGTCATCG GCGCACTGCT GGCGGCGGTG
TACGTCGGCC TGCTGAAGAT CGCCGCGAGC AACCCGCCGC TGCCGCCGGA AGACCCCACC
GCGCCGCTGG ACCAGCTGCC ACAAACCCGT CCGGTGCTGC TCTCCGGCCT GCATTTCCTG
CTGCCGGTGG TGGTGCTGGT CTGGTGCCTG ATGGTCGAGC GTCTGTCGCC CGGCCTGTCG
GCCTTCTGGG GCAGCGTGAT GCTGGTGTTC ATCCTGCTCA CCCAGCGTCC GCTGCTGAGC
TGGCTGCGCA CCGACGGCAG CCATGACCAC GGCAGCTTCA AGGACGGCGT GATCGACCTG
CGCGAAGGCC TGATCGCCGG TGCGCGCAAC ATGATCGGCA TCGGTATCGC CACCGCGGCG
GCCGGCATCA TCGTCGGCGC GGTGTCGCAG ACCGGCGTCG GCCTGGTGCT GGCCGATCTG
GTCGAGCTGC TGTCGATGGG CAACCTGCTG CTGATGCTGC TGCTCACCGC CTTCCTCAGC
CTGATTCTCG GCATGGGCCT GCCGACCACC GCCAACTACA TCGTGGTGTC CAGCCTGCTG
GCACCGGTGG TGGTGGCGTT GGGTCAGCAG AACGGCCTGA TCGTGCCGCT GATCGCGGTG
CACCTGTTCG TCTTCTACTT CGGCATCATG GCCGACGTCA CCCCGCCCGT GGGGCTGGCC
TCGTTCGCCG CCGCGGCGGT GTCCAAGGGC GACCCGATCA AGACCGGGAT TATGGCCTTC
TACTACAGCC TGCGTACCGC CGCGCTGCCG TTCCTGTTCA TCTTCAACAC CGACCTGCTG
CTGATCAACG TGGACTTCTG GCACGGCGTG CTGATCTTCA TCGTGGCGAC CATCGCCATG
CTGATCTTCG CCGCGGGTAC CCAGGGCTTC TTCCTGGTGC GCAGCCGCTG GTACGAGAAC
ATCCTGCTGC TGCTGGTGGC CTTCACCCTG TTCCGTCCAG GGTTCTGGAT GGACATGCTG
CACGACCCCT ACCAGGAAGT GCCGCCCGCG CAGCTGGCGC AGGCGCTCGG TGAGGTGAGC
GAGGACAGCC AGCTGCGCCT GCGCGTGCGT GGCGAGGACG CCCTGGGCGA TCCGCGCACC
TTCACCCTGC TGTTGCCGAT CCCCGACGGC GCCACGGGCG AGGAGCGTCT GAGCAAGCTC
GGCCTGACCC TGATGGAGGA AGGCGACAAG GTGCTGGTGG ACAGCGTGGC GTTCGGCAGC
CCGGCCGCCG AGGCGGGCCT GGAGTTCGAT CAGCAGATCC TCAGCGTCAA GGCGCCGACC
GACCGCTGGG TCAAGGAGCT GATGTGGATC CCCGGCTTCC TGCTGTTCGG CCTGATCGTG
CTGTTGCAGC GCCGTCGGCA GAAGGCGCAG GTCGCCTAA
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| Protein sequence | MPDKQLSTEE LIAQDVGART PVGAMAQVIA GLALLWSLFQ LWIASPLPFV FGFGVFNDTQ
TRAIHLTFAL LLAFLAYPAF RKSPRDRVPL LDIALGLIAA ACSAYLFVMY QQLAMRPGSL
TTTDLVTACI GIPLLLEATR RALGPALAVI ALVFLVYSLA GPWMPGMLAH RGVSLNALAN
HQWITTEGVF GIALGVSTSF VFLFVLFGAL LERAGAGHYF IQLAFSLLGH LRGGPAKAAV
VASGMTGLIS GSSIANTVTT GTFTIPMMKR TGFSSEKAGA VEVASSVNGQ IMPPVMGAAA
FLMVEYVGIP YIEVIKHAFL PALISYIALI YIVHLESMKL GLKPIGGHQP KPWLRRLTGF
AFGAALISGL SLGVYYGLGW LKPALGDAAI WVIGALLAAV YVGLLKIAAS NPPLPPEDPT
APLDQLPQTR PVLLSGLHFL LPVVVLVWCL MVERLSPGLS AFWGSVMLVF ILLTQRPLLS
WLRTDGSHDH GSFKDGVIDL REGLIAGARN MIGIGIATAA AGIIVGAVSQ TGVGLVLADL
VELLSMGNLL LMLLLTAFLS LILGMGLPTT ANYIVVSSLL APVVVALGQQ NGLIVPLIAV
HLFVFYFGIM ADVTPPVGLA SFAAAAVSKG DPIKTGIMAF YYSLRTAALP FLFIFNTDLL
LINVDFWHGV LIFIVATIAM LIFAAGTQGF FLVRSRWYEN ILLLLVAFTL FRPGFWMDML
HDPYQEVPPA QLAQALGEVS EDSQLRLRVR GEDALGDPRT FTLLLPIPDG ATGEERLSKL
GLTLMEEGDK VLVDSVAFGS PAAEAGLEFD QQILSVKAPT DRWVKELMWI PGFLLFGLIV
LLQRRRQKAQ VA
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