Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4428 |
Symbol | |
ID | 5106727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4855052 |
End bp | 4856275 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640505699 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_001189907 |
Protein GI | 146309442 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000000922953 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.414571 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGGCG CTCTGTCCCA TATCCGTGTG CTCGACCTGT CTCGCGTGCT CGCCGGCCCC TGGTGCGGGC AGATCCTGGG TGATCTGGGC GCCGAGGTGA TCAAGGTCGA GCGGCCGGGA AGCGGGGACG ACACTCGGCA TTGGGGGCCT CCCTATATAA AGGACGCCGA AGGCAATGAT TCGCGTGAGG CGGCTTACTT CCAGAGCGCC AATCGCAACA AACAGTCGCT GACCCTGGAC TTCACCCAGC CTGAAGGGCA GCGACTGGTT CGTGAGCTGG TCGCGCAGTG CGATGTACTG CTGGAGAACT TCAAGGTCGG CGGCCTGGCG GCCTATGGCT TGGATTATGA ATCGCTGAAG GCGATCAATC CGCGTCTGAT CTACTGCTCC ATCACCGGCT TCGGCCAAAC CGGTCCTTAT GCCAAGCGTG CCGGTTACGA TTTCATGATC CAGGGGCTCG GCGGTCTGAT GAGTTTGACC GGGCGTCCTG AAGGTGAAGA GGGGGCGGGG CCGATGAAGG TCGGTGTGGC GCTGACCGAT ATCCTTACCG GGCTCTATGC GACCGTGGGC GTGCTGGCTG CACTGAATCA GCGTGAGCAG TCCGGTATCG GCCAGCATAT AGATGTGGCA TTGCTCGACG TCCAGGTCGC CTGTCTGGCC AACCAGGCCA TGAACTACCT GGCAACGGGT GTATCGCCCA GGCGTCTGGG TAATGCCCAC CCCAATATCG TGCCGTACCA GGACTTTCCC AGCGCCGACG GTAATTTCAT CCTGGCCGTG GGTAACGACG GTCAGTTCCG CAAGTTCTGC GAGGTCGCCG GCCTTCCGGC TTTGGCCGAC GATCCGCGTT TTTCCACCAA TAAGGCTCGG GTCGCGCATC GTGCCGAGCT GATTCCGCTG CTGCGGCAGG CCACGGTATT CAAGACCACG ACGCAGTGGA TCGAATTGCT GGAGAAGGCC GGTGTGCCGT GTGGGCCGAT CAACGATCTA CAGCAGGTGT TCGCCGATCC GCAGGTGCAG GCGCGTGGGC TGCGTATCGA CCTGCCCAAC GCCATGGGCA GCACTACGCC GCAAGTCGCC AGTCCGCTGC GCCTATCTGC TACGCCAGTG GCTTATCGCT CGGCTCCGCC ATTGTTGGGG CAGCACACCG AGGCCCTGTT GCAGAGACTG CTAGGTATGA GCGAAACACA GGTTGCAGAG CTGCGTGAGG CGGGTGTGAT CTGA
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Protein sequence | MPGALSHIRV LDLSRVLAGP WCGQILGDLG AEVIKVERPG SGDDTRHWGP PYIKDAEGND SREAAYFQSA NRNKQSLTLD FTQPEGQRLV RELVAQCDVL LENFKVGGLA AYGLDYESLK AINPRLIYCS ITGFGQTGPY AKRAGYDFMI QGLGGLMSLT GRPEGEEGAG PMKVGVALTD ILTGLYATVG VLAALNQREQ SGIGQHIDVA LLDVQVACLA NQAMNYLATG VSPRRLGNAH PNIVPYQDFP SADGNFILAV GNDGQFRKFC EVAGLPALAD DPRFSTNKAR VAHRAELIPL LRQATVFKTT TQWIELLEKA GVPCGPINDL QQVFADPQVQ ARGLRIDLPN AMGSTTPQVA SPLRLSATPV AYRSAPPLLG QHTEALLQRL LGMSETQVAE LREAGVI
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