Gene Pmen_4421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4421 
Symbol 
ID5107116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4843065 
End bp4843436 
Gene Length372 bp 
Protein Length123 aa 
Translation table11 
GC content63% 
IMG OID640505687 
Productflagellar motor switch protein FliN 
Protein accessionYP_001189900 
Protein GI146309435 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02480] flagellar motor switch protein FliN 


Plasmid Coverage information

Num covering plasmid clones56 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.465417 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCC CCATTTCCGA TAATGATTTC GACAGCCTGA TCAACGATGC CGGCCTCAAC 
CTCGACGAGC CCGTCAGCGA GCCCGTCGCG GAGCAGGCGC CCGCCAGCCT GCCGCAGCAG
GACCTGAGCT TCTTCGGCAA GATTCCGGTC AATGTCACTC TGGAAGTGGC CTCCACCGAG
ATCACCCTCA AGGAGCTGAT GGATGTCGAT GCAGGCAGCG TGATCGCCCT CGACAAGCTG
GCCGGCGAGC CGCTGGACGT GAAGGTCAAC GGTGCGCTGT TCGCCAAGGC CGAAGTGGTG
GTGATGAACG GCAACTACGG CCTGCGCATC GTCGAGCTGT CCGGTAGCGG CCTCAGCGGG
CTGGGCGTGT GA
 
Protein sequence
MSSPISDNDF DSLINDAGLN LDEPVSEPVA EQAPASLPQQ DLSFFGKIPV NVTLEVASTE 
ITLKELMDVD AGSVIALDKL AGEPLDVKVN GALFAKAEVV VMNGNYGLRI VELSGSGLSG
LGV