| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4417 |
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| Symbol | fliF |
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| ID | 5107112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4838297 |
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| End bp | 4839976 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640505683 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001189896 |
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| Protein GI | 146309431 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.411819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGCAGA CCCTGAAAAG CAAGCTGCCC GAAGGCGGCC TGAAACTCGA CCCGCGCCTG
AGCCTGGTCG GCCTGGCGCT GATCGCCGCG CTGCTGGCCG TCGGCGTGGT GTTCTATCTC
TGGCGTGACC AGGGCTCTTT CCGCCCGCTG TACGGCACCG GCGAGGCCTA TCCGGCCGCC
GAGGTGATGC AGGTGCTCGA CGGCGACGCC ATCAGCTACC GCTTGCATCC GCAAAGTGGT
CAGGTGCTGG TGCGCGAGGA TCAGCTCGGC CGTGCGCGCA TGCTGCTGGC GGCCAAGGGC
GTGCAGGTCA AGGTGCCGGC CGGTTACGAG CTGTTCGACA AGGACGAGCC GCTGGGCACC
AGCCAGTTCG TTCAGGACGT GCGCCTCAAG CGCAGCCTGG AGGGCGAGCT GGCGCGCACG
GTGATGGCAC TCAAGGGTGT GGAAGGTGCC CGCGTGCACC TGGCGCTGCA GGAAAGCAGC
TCCTTCGTGG TCGGCAAGCG CGAGCCGGGC AAGGCCTCGG TGATGCTGCA GCTGGCGCCC
GGCTACAAGC TGGCGCCGGA GCAGGTCAGC GCCATCGTCA ACCTGGTGGC CGGCAGCGTG
CCGCAGCTCG ATGCCGCCAA CGTACAGGTG GTCGATCAGT ACGGCGCGCT GCTGTCGCGG
GGCATCGATA CCCTCGGCGG TCCGGTGCAG AACTGGCAGG TGGTCGACGA CTACCAGAAC
AAGGCGGTGG CCAACGCCGA GGCGGTGCTG GCACCGGTTC TGGGTAACGG CAACTACCGC
ATCAGCGTCG CCGCCGATAT CGATTTCAGC CAGAAGGAAG AGACCTTCCA GGCCTACGGC
GAGACCCCGC GCCTGCGCAA CGAGGTGCTG CGCGACGAAA GCGTGCTCGA CCAGCTGGCC
CTCGGTGTGC CCGGTTCGCT GGCCAACCGT CCGCCGCAGC CCGCCCCGGA GCCGGTCGAA
GGGCAGCCGC CGGCCGAGGG CGAGGCGGCC AACAAGGCGG CCACCTCACT GCGCAAGGAA
TCCAATCGCC AGCTCGATTA CGACCAGAGC GTCACCCACG TCAAGCACGC ACCGTTCAGT
CTGCGCCAGC AGAGCATTGC CGTGGTGCTC AACGCCGCGG CGGCGCCCGA GGGCGGCTGG
ACCGCCGAGG CGCGCGCGGA GCTGGAGGCC ATGGTCAAGA GCGCCGTGGG CTTCAACCAG
GCGCGCGGCG ATCTGCTGAC CCTCAGCGTG TTTCCCTTCA CCGCTGCCGG CGCGGATGCG
GCGCAGGGCG AGGCGTTGCC CTGGTGGGAG AACGTCAAGG TGCACGAGCT GGCCAGGCTC
GGCGTGTTCG CCCTGATCAG CCTGTTGCTG TTGCTGATGG TGGTGCGTCC GGCCGTGCGC
AGCCTGACCC AGCGCAGCCA GCCGGGGGTA GCGGCGGCGG TGCAGGGCGA CGAGCAGCTG
GCGTTGCACG CCGAGCGCAC CGCCGAACGC CTGCTGGCCC GTGTCGGCGA CGAACCTCCG
GGCGCCACGG TGCTCGGCGA GCTCAGCCCG CTGTCGGAGA TCCGCCTGCC GGCGCCCGGC
TCGGGCCTGG AACTACAGAT CGAACACCTG CAGATGTTGG CCAAGAACGA TCCCGAGCGC
GTCTCGGAAG TCATCAAACA ATGGATAGGA CGCAATGAGC GAGACCTCAA CCCAGCCTGA
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| Protein sequence | MLQTLKSKLP EGGLKLDPRL SLVGLALIAA LLAVGVVFYL WRDQGSFRPL YGTGEAYPAA
EVMQVLDGDA ISYRLHPQSG QVLVREDQLG RARMLLAAKG VQVKVPAGYE LFDKDEPLGT
SQFVQDVRLK RSLEGELART VMALKGVEGA RVHLALQESS SFVVGKREPG KASVMLQLAP
GYKLAPEQVS AIVNLVAGSV PQLDAANVQV VDQYGALLSR GIDTLGGPVQ NWQVVDDYQN
KAVANAEAVL APVLGNGNYR ISVAADIDFS QKEETFQAYG ETPRLRNEVL RDESVLDQLA
LGVPGSLANR PPQPAPEPVE GQPPAEGEAA NKAATSLRKE SNRQLDYDQS VTHVKHAPFS
LRQQSIAVVL NAAAAPEGGW TAEARAELEA MVKSAVGFNQ ARGDLLTLSV FPFTAAGADA
AQGEALPWWE NVKVHELARL GVFALISLLL LLMVVRPAVR SLTQRSQPGV AAAVQGDEQL
ALHAERTAER LLARVGDEPP GATVLGELSP LSEIRLPAPG SGLELQIEHL QMLAKNDPER
VSEVIKQWIG RNERDLNPA
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