| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4390 |
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| Symbol | |
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| ID | 5107243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4812623 |
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| End bp | 4814731 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640505656 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001189869 |
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| Protein GI | 146309404 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0406884 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCA TAGACGCTCT CGCCGATCGG CTTTCGACCT ATCTCGGCCA TGACCAGGTC
AACCTGGTCC GCCGCGCCTA CTTCTACGCC GAACAGGCGC ACGATGGCCA ACGCCGCCGC
AGCGGCGAGG CCTACGTGAC CCATCCGCTG GCCGTGGCCA GCATCCTCGC CGATATGCAC
ATGGATCATC AGAGCCTGAT GGCCGCCATG CTGCACGACG TCATCGAAGA CACCGGCATC
GCCAAGGAAG CGCTCAACGC GCAGTTCGGC GAAACCGTGG CCGAACTGGT CGACGGGGTC
AGCAAGCTGA CCCAGATGAA CTTCGAGACC AAGGCCGAGG CACAGGCCGA GAACTTCCAG
AAGATGGCCA TGGCCATGGC CCGCGACATC CGCGTGATTC TGGTCAAACT CGCCGACCGC
CTGCACAACA TGCGCACCCT CGATGCCATG CCGCACGAGA AGAGCCGGCG CATCGCCAAG
GAAACCCTGG AAATCTACGC GCCCATCGCC AACCGCCTGG GCATGCACAA CATGCGCGTG
GAATTCGAGG ACCTGGGCTT CAAGGCCATG CACCCGATGC GCTCCGAGCG CATCCGCGCC
GCCGTGCGCC GCGCTCGGGG CAACCGCAAG GAAATCGTGG CCAAGATCGA GGAATCGATC
CAGATGTGCC TGCAGCGCGA GGGCATGGAA GGCGAAGTGA TCGGCCGCGA GAAACACCTC
TACAGCATCT ACCAGAAGAT GCGCGGCAAG CGTAAGGCGT TCAACGAGAT CATGGACGTC
TACGCCTTCC GCATCATCGT CGACAAGGTC GACACCTGCT ACCGCGTGCT CGGCGCCGTG
CACAACCTGT ACAAACCACT GCCGGGTCGC TTCAAGGACT ACATCGCGAT TCCCAAGGCC
AACGGCTACC AGTCGCTGCA CACCACGCTG TTCGGCATGC ACGGCGTGCC CATCGAGATC
CAGATCCGTA CCCGCGAGAT GGAAGAGATG GCCAACAACG GCATCGCCGC GCACTGGCTG
TACAAGTCCA ACGAGGACGA AGTGCCCAAG GGCAACCATG CCCGTGCACG CCAGTGGGTC
AAGGGTGTGC TGGAACTGCA GCAGCGCGCC GGCAATTCGC TGGAATTCAT CGAAAGCGTG
AAGATCGACC TGTTCCCGGA CGAGGTCTAC GTGTTCACGC CCAAGGGCCG CATCATGGAG
CTGCCGAAAG GCTCCACCGC GGTCGACTTC GCCTACGCGG TGCATACCGA CGTCGGCAAT
ACCTGCATCG CCTGCCGCAT CAACCGCCGT CTGGCACCGC TGTCGCAGGC GCTGGAAAGC
GGCTCGACGG TGGAAATCGT CACCGCGCCG GGCGCCCGAC CGAATCCGGC CTGGCTCAAC
TTCGTGGTCA CCGGCAAGGC GCGCACACAC ATCCGCCATG CCCTCAAGCA GCAGCGCCGT
TCCGAATCCA TCAGCCTCGG CGAACGCCTG CTGAACAAGG TCCTGGCCAG CTTCGACACG
CACCTGGAGA AGATTGCCCC CGAGCGCGTA CAGGCGGTGC TCGGTGAATA CCGCCAGGAA
GTGATCGAGG ATCTGCTGGA GGACATCGGC CTGGGCAACC GCATGGCCTA CGTGGTCGCC
CGTCGCCTGC TGGCCGAAAG TGGCGAGGCC CTGCCGAGCA GCGAAGGCCC GCTGGCCATT
CGCGGCACCG AAGGCCTGGT ACTGAGCTAC GCCAAGTGCT GCACGCCGAT TCCGGGCGAC
CCCATCGTCG GCCACCTGTC GGCCGGCAAG GGCATGGTGG TGCACCTGGA AAGCTGCCGC
AACATCAGCG AAATCCGCCA CAACCCGGAA AAATGCATCC AGCTCAACTG GGCCAAGGAT
GTCGCCGGCG AATTCAACGT CGAACTGCGC GTCGAGCTGG AGCACCAGCG CGGCCTGATC
GCCCTGCTGG CCAGCAGCGT CAACGCCGCC GATGGCAACA TCGAGAAGAT CGGCATGGAC
GAGCGCGACG GCCGGATCAG CGTGGTACAG CTGGTGATCA GCGTGCATGA CCGCGTCCAC
CTGGCCCGCG TGATCAAGAA ACTGCGCGCG ATCAAGGGCG TGATGCGTAT CACCCGAGTA
CGCGCCTGA
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| Protein sequence | MAGIDALADR LSTYLGHDQV NLVRRAYFYA EQAHDGQRRR SGEAYVTHPL AVASILADMH
MDHQSLMAAM LHDVIEDTGI AKEALNAQFG ETVAELVDGV SKLTQMNFET KAEAQAENFQ
KMAMAMARDI RVILVKLADR LHNMRTLDAM PHEKSRRIAK ETLEIYAPIA NRLGMHNMRV
EFEDLGFKAM HPMRSERIRA AVRRARGNRK EIVAKIEESI QMCLQREGME GEVIGREKHL
YSIYQKMRGK RKAFNEIMDV YAFRIIVDKV DTCYRVLGAV HNLYKPLPGR FKDYIAIPKA
NGYQSLHTTL FGMHGVPIEI QIRTREMEEM ANNGIAAHWL YKSNEDEVPK GNHARARQWV
KGVLELQQRA GNSLEFIESV KIDLFPDEVY VFTPKGRIME LPKGSTAVDF AYAVHTDVGN
TCIACRINRR LAPLSQALES GSTVEIVTAP GARPNPAWLN FVVTGKARTH IRHALKQQRR
SESISLGERL LNKVLASFDT HLEKIAPERV QAVLGEYRQE VIEDLLEDIG LGNRMAYVVA
RRLLAESGEA LPSSEGPLAI RGTEGLVLSY AKCCTPIPGD PIVGHLSAGK GMVVHLESCR
NISEIRHNPE KCIQLNWAKD VAGEFNVELR VELEHQRGLI ALLASSVNAA DGNIEKIGMD
ERDGRISVVQ LVISVHDRVH LARVIKKLRA IKGVMRITRV RA
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