Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4371 |
Symbol | |
ID | 5107224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4793673 |
End bp | 4796555 |
Gene Length | 2883 bp |
Protein Length | 960 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640505637 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001189850 |
Protein GI | 146309385 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.433871 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTCACC TGCTCCGCTC ACTGCTCGTT CTGCTATGGC TGACCTGCGC CGTCACGGCC CGGGGCGGCG ACGCGCTGCC GTTGCTGCAG CTGAGCAACG AGCAGCTGAC CACGCCGGTG AGCATCGAGC ACAGCCTGCT GCTGGAGGAC CCCGGCGCGC AGCTCACCGC CAGCGAGGTG TTGCAGCGCA TCGGCCGCGA AGGTCGGCCG GTGCAGGGCA CACCGCGCAT CGGCTACTCA CGCAGCGCCT GGTGGCTGGC CGTGCAGTTG CAGACGCCGC CGGCCGAACG CCTGCAACTG ATCGTCGGCC AGACCTTCCT CGACGATCTG GAAATCTGGC TGTTCGCCGA TCAGCAACCG CTCGGCCCGC TGTACAGCGG CTCGCTGCGT CCCTTCAACG AGCGCGGCGA ACCCTATCCA CAGTTTCTCA TCAGCCTGCC ACGTCTGGGC GAAGGCCCGC ACAACCTGTT GCTGCGCGTG CAGAGCCACT CGGCGATCAC CCTGCCGCTG CAGCTGGTCG GCGCGCAGCA GGGTCAGCAA CTGATCGCCC ACAGCTGGCT GCAGAGCGGT CTGCTGGTGG GTGCCCTGCT CGCCCTGGCG CTGTTCTATC TGCTCAAGTA CAGCACCCTG CGCGAGCCGC AGCTGGCCTA CTTCAGCCTG ACGGCGCTGT GCGTGGCGTT GTACAACGTC AGCCTGTACA ACCTCAGCGG GCTGCTCTGG CCGCAGTGGC CACTGCTGCC CAAGTGGCTG GTCAACCTGA CCACCGCCGG CATGCTGATT TTCAGCTCGC TGTTTCTCGC CAGCGCCCTG CGCCTGGAGC TGGGGCGCCT GCGCTGGCTG CGCGACGCGC TGTTCGCCGC GGTGCTGCTG GTGTGTCTGG GCGGCCTGGC TATCAGCCAT GCCTATACCT ACCAGACCCT CAATCTGCTG ATCCTCTGCA CCGGCCTCTA CCAGTTGCTG GTGATGTGCC TCGGGGTCTA CCAGCGCCGA CCCTACGCGC CGGGTTATCT GCTGTGCTGG AGCGCGGCGC TGGTGCTGAT GCTGCTGGTG CCGCTGAGCC GGGTCGGCCT GATTCCGCTG CCGCCAGGCT TCTATGCGCT GTATGCCTAC CTGCCGGCGC TGAGCATGCT GCTGTTCGGC GCCCTGCTCG ACAAGCAGCT GGAGCGTGTA CGCCGGGTGT TGCTGAGCAG CCAGGCGCAG GCCATCGACA ACCTGGAGCA GTACCAGGCG CTGTTCCGCC ACAGCGGCGA GGGCATCTTC CGCTGCGACC GCGACGGCAG GCTGCTGGAA GCCAACCCGA GCCTGGCACG CCTGCTCGGC GGCGATACGC CGGCCACCCA GCTGGTCGGC CTGCCGCTGC AGCGCCTGCT GGGCGAGGCG CAGTGGCGCG AGCTGCTGCA GGAGCTCGAC ACCCAGGCCG GTACCGTCAG CTGCGAATGC CAGCTGCACG ACCTGGCCCA GCGCCCCCTG TGGGTCTACC TGTCGCTGCA TCTGCGCCCT CAGCGAGACT GCATCGAAGG CATAGTGGTC GATCTCAGCG AGCGCCGCGC GCTGGAAGAA CGCCTGCAGC AACTGGCCGC GCATGACGCG CTGACCGGCC TGCTCAATCG CCGCGAACTG GAGAGGCTGC TGTCGGAGAC GCTGGGCGGC ACCGCCAAGC GCCGCTTCAG CCATCTGCTG CACCTGAGCC TGGATCGCTT CAAGCAGGTC AACGACCTCT GCGGTCACTC CGCCGGCGAC CAGCTGCTGC GGCAGCTGGC GACCCAGCTC GGCCACCAGC TGCCGCGCCA TGCCGAGCTG GCCCGCGTCG GCGGCGACGA GTTCGCCGTG CTGCTGCGCG AGGTCGACGA TGAGGCCGCC CTCAAGCAGG CCGAGGCGCT GCGGCGAGCG GTCGAGCAGT TCGTCTTCAC CTGGCAGGGA CGGCCCTTCC GCCTGCACAC CAGCATCGGC CTGCTTGCCC TCGGCTCCGG CGTGCGCGAT TGGGAAACCG CGCTGACCTG GGCCAGCAGC GCCAGTCAGC TGGCCAAGCA CCAGGGCCGC AACCGCGTGT GCCAGTTCAA CCCGGAAGAT GGCGCACTGC TCGAGCATCA ACGCCAGCTG CAATGGATCA CCCGCCTGCG CGAAGCCTGC GAGCGCGGTC ACTTCGAGCT GTTCTTCCAG CCGGTACAGG CCCTGCAAAG CGCTGCCAGC GGCCTGCACT ACGAGGTGCT GCTGCGCTAC CGCGACCCGG CGAGCGGCGA ATGGGTCAGC CCGGCGCAGT TCCTCGACGC GGCAGCGCGC TACGACTTCC TCGGCGCCAT CGACCGCTGG GTGATCCAGC ACCTGTGCGC CTGGCTGGCT GCCAACCCGC GTCATCTGGC GCAGCTGGCC CAGGTCAACG TCAACCTCAG CGCCAGCTCG CTGCTCGACA GCGCCTTTCA CCAGCTGCTG GAACAGGAGC TGAGTCGGCA CCAGCTGCCG CCCGGCAAGC TGTGCATCGA AGTCACGGAA ATGGTCGCCC TCGGCGAACT GGGCGTGTCT GCCCAGTGGA TCGACGAGCT GCGCAGCAAG GGGCTGAAGG TGGCACTGGA CGACTTCGGC AGCGGCTTCG CCTCCTACGC CTATCTGCGT CACCTGCCGC TGGATATCCT GAAGATCGAC GGCAGCTTCA TCAGTGGCAT CGAGTCCGAC CCGATCAACC AGGCCATGGT CGGCTCGATG CGCCAGATCG CCAGCCAGCT CGGCCTGCTC ACCGTCGCCG AGTTCGTCGA GACCCAGGCC AGCCTGGACT GCCTGCGCCG GCTCGGCATC GACTACGCAC AGGGCTACTT CGTCGGCCGC CCGCAGCCGC TGCGCCAGCT GGCCGACGAC GCCCGCAGCC GCGGCACTCA GGAAGCCTGG TAA
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Protein sequence | MVHLLRSLLV LLWLTCAVTA RGGDALPLLQ LSNEQLTTPV SIEHSLLLED PGAQLTASEV LQRIGREGRP VQGTPRIGYS RSAWWLAVQL QTPPAERLQL IVGQTFLDDL EIWLFADQQP LGPLYSGSLR PFNERGEPYP QFLISLPRLG EGPHNLLLRV QSHSAITLPL QLVGAQQGQQ LIAHSWLQSG LLVGALLALA LFYLLKYSTL REPQLAYFSL TALCVALYNV SLYNLSGLLW PQWPLLPKWL VNLTTAGMLI FSSLFLASAL RLELGRLRWL RDALFAAVLL VCLGGLAISH AYTYQTLNLL ILCTGLYQLL VMCLGVYQRR PYAPGYLLCW SAALVLMLLV PLSRVGLIPL PPGFYALYAY LPALSMLLFG ALLDKQLERV RRVLLSSQAQ AIDNLEQYQA LFRHSGEGIF RCDRDGRLLE ANPSLARLLG GDTPATQLVG LPLQRLLGEA QWRELLQELD TQAGTVSCEC QLHDLAQRPL WVYLSLHLRP QRDCIEGIVV DLSERRALEE RLQQLAAHDA LTGLLNRREL ERLLSETLGG TAKRRFSHLL HLSLDRFKQV NDLCGHSAGD QLLRQLATQL GHQLPRHAEL ARVGGDEFAV LLREVDDEAA LKQAEALRRA VEQFVFTWQG RPFRLHTSIG LLALGSGVRD WETALTWASS ASQLAKHQGR NRVCQFNPED GALLEHQRQL QWITRLREAC ERGHFELFFQ PVQALQSAAS GLHYEVLLRY RDPASGEWVS PAQFLDAAAR YDFLGAIDRW VIQHLCAWLA ANPRHLAQLA QVNVNLSASS LLDSAFHQLL EQELSRHQLP PGKLCIEVTE MVALGELGVS AQWIDELRSK GLKVALDDFG SGFASYAYLR HLPLDILKID GSFISGIESD PINQAMVGSM RQIASQLGLL TVAEFVETQA SLDCLRRLGI DYAQGYFVGR PQPLRQLADD ARSRGTQEAW
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