| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4361 |
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| Symbol | |
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| ID | 5107214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4779444 |
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| End bp | 4780529 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505627 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001189840 |
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| Protein GI | 146309375 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.671906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTCA CACATTCGTT TTCCCGCCTG ACCCTGGGTA TCTCCGCCGC CGCGCTGCTC
GCCGGCAGTC TGCTGGCCAG CCCGGCGATG GCCAGCGAGA AGATCCGCTG GCAGGTGCCC
CTGGCCTTCC CCTCCCACCT GGTGGGCCTG ACCACCCCGG TCAAGCACCT TTCCGAATCG
CTCAAGGCCA TCTCCGGCGG CGACATCCAG CTGCGCTACT ACGAGCCGGG CGAGCTGGTG
CCGCCCTTCG AGATCATGAA CGCGGTGAGC AGCGGCAAGT ACCCGGCCGG CTACACCTGG
ATCGGTTACG ACCAGGGCAG CATCCCGGCG CTGCCGCTGT ACTCCGGCGC ACCCTTCAAC
ATGGAGCCGC CGGCCTACCT GGCCTGGTAC TACCAGGGCG ACGGCAAGAA GCTGCTGGAA
GAAATCTACG CACCGCACAA GATCCACCCG ATGCTGTGCA GCATCATCGG CCCGGAAGGC
GCCGGCTGGT TCGCCCGGCC GATCGAGCAG CTGAAGGACT TCGACGGCCT GCGCATCCGC
TTCGCCGGCA TCGGCGGCAA GGTGCTGGAG AAGCTCGGCG CCTCGGTGAC CATGATCCCC
GGCGGCGAGA TCTACCAGGC GCTGGAGCGC AAGACCATCG ACGCCACCGA GTTCTCCCAG
CCGGCGATCG ACAAGATGCT CGGCCTCGAC CAGATCATCA AGAACTACAT CATGCCGGGC
TGGCACCAGA CCCTCACCAC CTCGCACCTA CTGGTCAACC AGGACGTGTG GAACAAGCTG
ACGCCGCAGA GCCGCGCGCT GATCGAGATG GGCTGCGAGT CGGCCACGCT CAAGGGCTTC
GCCGAGAGCG AGTGGGCGCA GCCGGCCGCC CTGGCCGCCT ACCAGCAGGA AGGGGTCAAA
CCGCAGGTGC TGCCCGAGCC GGTGCTGCGC GAACTGCAAC GCGTGAGCAA CGAGGTGCTG
GACGAGATGG CCGCCAAGGA CCCGATGTTC AAGCGCGTGC TGAGCAGCCA GCGCGAGTTC
ATGGCGCAGC ACGCCACCTG GCACGGTATG GGTTACCTGC CACGGGACTA CTACCAGCAC
GACTGA
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| Protein sequence | MSVTHSFSRL TLGISAAALL AGSLLASPAM ASEKIRWQVP LAFPSHLVGL TTPVKHLSES
LKAISGGDIQ LRYYEPGELV PPFEIMNAVS SGKYPAGYTW IGYDQGSIPA LPLYSGAPFN
MEPPAYLAWY YQGDGKKLLE EIYAPHKIHP MLCSIIGPEG AGWFARPIEQ LKDFDGLRIR
FAGIGGKVLE KLGASVTMIP GGEIYQALER KTIDATEFSQ PAIDKMLGLD QIIKNYIMPG
WHQTLTTSHL LVNQDVWNKL TPQSRALIEM GCESATLKGF AESEWAQPAA LAAYQQEGVK
PQVLPEPVLR ELQRVSNEVL DEMAAKDPMF KRVLSSQREF MAQHATWHGM GYLPRDYYQH
D
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