| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4360 |
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| Symbol | |
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| ID | 5107213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4778784 |
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| End bp | 4779371 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505626 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_001189839 |
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| Protein GI | 146309374 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.490074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACACC CCACATCCGC CGCTGCGGCG CTACCCCATA ACCGCCTGTC CAGCATTCTG
GACCGTCTCG TCGCCGCCAT CGGCAAGGCC AGCGCCTGGC TGTGGCTGGC CGTGCTACTG
GTGGTGCTGT GCAACGTGTT CAGCCGCTTC ATCCTGTCGC GCGGCTCGAT TGCCCTGGAG
GAGCTGTCCT GGCACCTGTT CGGCGCCGCC ATGATGCTCT CGCTGGGCTA CGCCGTGGTG
CGCGACGACC ATGTGCGCGT CGACGTGCTG CGCGAGAAAT TCCCCCTGCG CGCCCAGGCC
TGGATCGAGC TGCTGGGCAT CGTCCTGCTG GCCCTGCCGG TGATCGTGCT GATGATCGAT
AGCCTGCTGG CCTACGCCCA CACCGCCTTT GTCTACATGG AGCACTCGCA GGCGCCGAGC
GGGCTGCCCT ATCGCTTCGT GTTCAAGAGC GTGCTGCCGC TGGGGCTGAT TCTTGTGGCC
ATAGCCCTGA TCGCCCGCGC CTCGCGCTGC AGCACCCTGC TGCTGCATTT CCCGCGGGCC
ATCGATGCGC CCGACGAGCC CGCCAACGGC GCTCACCCGC ACCCCTGA
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| Protein sequence | MQHPTSAAAA LPHNRLSSIL DRLVAAIGKA SAWLWLAVLL VVLCNVFSRF ILSRGSIALE
ELSWHLFGAA MMLSLGYAVV RDDHVRVDVL REKFPLRAQA WIELLGIVLL ALPVIVLMID
SLLAYAHTAF VYMEHSQAPS GLPYRFVFKS VLPLGLILVA IALIARASRC STLLLHFPRA
IDAPDEPANG AHPHP
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