Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4358 |
Symbol | |
ID | 5107211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4775834 |
End bp | 4777312 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640505624 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_001189837 |
Protein GI | 146309372 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCATTT CCCGTGACGA CCTCGACCAG CACGGCCTGA TCATCGGCGT GTCGCCCGAG CGCTTTCGCG CCGTGGCCAT GCCGCTGCTG TTCGACCACC TCGACGCCCA GTGCGAGGGC ACCATCGCGG TCAATCGCCA GGCGCGCATC GTCTGGATCA ACGACAAGTA CGCGCAGAAG GTCGGCATCA GCGATCCGCG CAGCGCGCTG GGCAAGGAGG TCGAAGAGGT GCTGCCGGCC AGCCGCCTAC GCGAGGTGGT GGAAAGCGGC CAGCCGAGCA TGCTCGACCT GATGGCCTTC GGCGACGAGC ACTTCGTGGT CACCCGCATC CCCCTGCGCG ACGAGGACGG CACCCTGGTC GGCGCCCTCG GTTTCGTCCT GTTCGACCGC GCCCGCCATC TCAAGCCGCT GATGGCCAAG TACGCCAACC TGCAGACCCA GCTGCTCGCC ACCCAGCACG AGCTGGCCAA GGCGCGTCGT GCGCGCTACA CCATCGCCGG CTTCATCGGC GCCAGCGCGG CGGCCAGCGA GGTCAAGCGC CAGGCGCGCC GCGCCGCGCA ACTCGACGCC ACGGTGCTGA TTCGTGGCGA GACCGGCACC GGCAAGGAGC TGCTGGCCCA GGGCATTCAC AACCTGTCGC CGCGGGCCAA CGGCCCCTTC GTTGCGGTCA ACGTTGCGGC GATTCCGGAA ACCCTGGTCG AAGCCGAGCT GTTCGGCACC GCGCCGGGGG CCTTCACCGG CGCCGAGCGC AAGGCGCGCA TCGGCAAGTT CGAGGTGGCC AACGGCGGCA CGCTGTTTCT CGACGAGATC GGCGACCTGC CGCTGCCGCT GCCGCTGCAG GCCAAGCTGC TGCGCGTGCT GCAGGAGCAG GAGGTGGAGC CGCTCGGCTC CAACCAGGTC AAGCCGCTCA ACGTGCGGGT GATCGCCGCC ACCCATATCG ACCTGGAAGC CAAGGTGGCG GCCGGGCAGT TTCGCGGCGA TCTGTACTAC CGCCTCAATG TCCTGGCCCT GCAGGTACCG CCCCTGCGCG AGCGGCGCGA GGACATCCCG GCGCTGGTCG AATTTCTCCT CGACGACATC GCCAATCGCT CCGGCCAGGC GCCCATGGAG CTGAGCCACA AGGCGCTGAG CCTGCTCGCC CGTCAGCCCT GGAAGGGCAA CGTGCGCGAG CTGCGCAACC TGCTCGAGCG CGCCCAGCTG GATGTCGACG GCCCGCTGCT GGATGTACCC CAGTTGCAGC CACTGCTGGC CGCTCCCGGC AGCGCCGCGG CGACGGAAAC GCCGACCAGC CCGGCCGCGC CCGGTGCCGA CGAGCCCGTG CAGCCGCTGG CGCAGACCCT TGCCCAGGCC GAGCGGCGTG CCCTGCAGAG CATGCTGGTG GCCTGCAAGG GCAACCGCCG CCGCGCCGCC ATGGAGCTGG GCATCTCCCG CGCCAGCCTG TACAGCAAGC TGCAGCAGCA CGGCCTGAGC CAGCGCTAG
|
Protein sequence | MAISRDDLDQ HGLIIGVSPE RFRAVAMPLL FDHLDAQCEG TIAVNRQARI VWINDKYAQK VGISDPRSAL GKEVEEVLPA SRLREVVESG QPSMLDLMAF GDEHFVVTRI PLRDEDGTLV GALGFVLFDR ARHLKPLMAK YANLQTQLLA TQHELAKARR ARYTIAGFIG ASAAASEVKR QARRAAQLDA TVLIRGETGT GKELLAQGIH NLSPRANGPF VAVNVAAIPE TLVEAELFGT APGAFTGAER KARIGKFEVA NGGTLFLDEI GDLPLPLPLQ AKLLRVLQEQ EVEPLGSNQV KPLNVRVIAA THIDLEAKVA AGQFRGDLYY RLNVLALQVP PLRERREDIP ALVEFLLDDI ANRSGQAPME LSHKALSLLA RQPWKGNVRE LRNLLERAQL DVDGPLLDVP QLQPLLAAPG SAAATETPTS PAAPGADEPV QPLAQTLAQA ERRALQSMLV ACKGNRRRAA MELGISRASL YSKLQQHGLS QR
|
| |