Gene Pmen_4358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4358 
Symbol 
ID5107211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4775834 
End bp4777312 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content70% 
IMG OID640505624 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_001189837 
Protein GI146309372 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATTT CCCGTGACGA CCTCGACCAG CACGGCCTGA TCATCGGCGT GTCGCCCGAG 
CGCTTTCGCG CCGTGGCCAT GCCGCTGCTG TTCGACCACC TCGACGCCCA GTGCGAGGGC
ACCATCGCGG TCAATCGCCA GGCGCGCATC GTCTGGATCA ACGACAAGTA CGCGCAGAAG
GTCGGCATCA GCGATCCGCG CAGCGCGCTG GGCAAGGAGG TCGAAGAGGT GCTGCCGGCC
AGCCGCCTAC GCGAGGTGGT GGAAAGCGGC CAGCCGAGCA TGCTCGACCT GATGGCCTTC
GGCGACGAGC ACTTCGTGGT CACCCGCATC CCCCTGCGCG ACGAGGACGG CACCCTGGTC
GGCGCCCTCG GTTTCGTCCT GTTCGACCGC GCCCGCCATC TCAAGCCGCT GATGGCCAAG
TACGCCAACC TGCAGACCCA GCTGCTCGCC ACCCAGCACG AGCTGGCCAA GGCGCGTCGT
GCGCGCTACA CCATCGCCGG CTTCATCGGC GCCAGCGCGG CGGCCAGCGA GGTCAAGCGC
CAGGCGCGCC GCGCCGCGCA ACTCGACGCC ACGGTGCTGA TTCGTGGCGA GACCGGCACC
GGCAAGGAGC TGCTGGCCCA GGGCATTCAC AACCTGTCGC CGCGGGCCAA CGGCCCCTTC
GTTGCGGTCA ACGTTGCGGC GATTCCGGAA ACCCTGGTCG AAGCCGAGCT GTTCGGCACC
GCGCCGGGGG CCTTCACCGG CGCCGAGCGC AAGGCGCGCA TCGGCAAGTT CGAGGTGGCC
AACGGCGGCA CGCTGTTTCT CGACGAGATC GGCGACCTGC CGCTGCCGCT GCCGCTGCAG
GCCAAGCTGC TGCGCGTGCT GCAGGAGCAG GAGGTGGAGC CGCTCGGCTC CAACCAGGTC
AAGCCGCTCA ACGTGCGGGT GATCGCCGCC ACCCATATCG ACCTGGAAGC CAAGGTGGCG
GCCGGGCAGT TTCGCGGCGA TCTGTACTAC CGCCTCAATG TCCTGGCCCT GCAGGTACCG
CCCCTGCGCG AGCGGCGCGA GGACATCCCG GCGCTGGTCG AATTTCTCCT CGACGACATC
GCCAATCGCT CCGGCCAGGC GCCCATGGAG CTGAGCCACA AGGCGCTGAG CCTGCTCGCC
CGTCAGCCCT GGAAGGGCAA CGTGCGCGAG CTGCGCAACC TGCTCGAGCG CGCCCAGCTG
GATGTCGACG GCCCGCTGCT GGATGTACCC CAGTTGCAGC CACTGCTGGC CGCTCCCGGC
AGCGCCGCGG CGACGGAAAC GCCGACCAGC CCGGCCGCGC CCGGTGCCGA CGAGCCCGTG
CAGCCGCTGG CGCAGACCCT TGCCCAGGCC GAGCGGCGTG CCCTGCAGAG CATGCTGGTG
GCCTGCAAGG GCAACCGCCG CCGCGCCGCC ATGGAGCTGG GCATCTCCCG CGCCAGCCTG
TACAGCAAGC TGCAGCAGCA CGGCCTGAGC CAGCGCTAG
 
Protein sequence
MAISRDDLDQ HGLIIGVSPE RFRAVAMPLL FDHLDAQCEG TIAVNRQARI VWINDKYAQK 
VGISDPRSAL GKEVEEVLPA SRLREVVESG QPSMLDLMAF GDEHFVVTRI PLRDEDGTLV
GALGFVLFDR ARHLKPLMAK YANLQTQLLA TQHELAKARR ARYTIAGFIG ASAAASEVKR
QARRAAQLDA TVLIRGETGT GKELLAQGIH NLSPRANGPF VAVNVAAIPE TLVEAELFGT
APGAFTGAER KARIGKFEVA NGGTLFLDEI GDLPLPLPLQ AKLLRVLQEQ EVEPLGSNQV
KPLNVRVIAA THIDLEAKVA AGQFRGDLYY RLNVLALQVP PLRERREDIP ALVEFLLDDI
ANRSGQAPME LSHKALSLLA RQPWKGNVRE LRNLLERAQL DVDGPLLDVP QLQPLLAAPG
SAAATETPTS PAAPGADEPV QPLAQTLAQA ERRALQSMLV ACKGNRRRAA MELGISRASL
YSKLQQHGLS QR