Gene Pmen_4355 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4355 
Symbol 
ID5107208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4771464 
End bp4772234 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content69% 
IMG OID640505621 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001189834 
Protein GI146309369 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCTCA ATGGAAAGAC CGCTCTGATC ACCGGCTCGA CCAGCGGGAT CGGCCTCGGC 
ATCGCCGAGG TGCTGGCGCG CAACGGCGCC AGCGTCATTC TCAACGGTTT CGGCGACTGG
CAGGCCGCGG CCGAACAGCT GGCGCGCCAC GAAGGACGCG TCGGCTACCA CGCCGCCGAC
CTCGCCGACC CGGCGCAGAT CGAGGCGCTG TTCGACTACG CCCGGCGCGA GTTCGGCCGC
GTCGATATCC TGGTCAACAA TGCCGGCATC CAGCATGTCG CGCCGCTGCA GGACTTTCCC
GCCGAACGCT GGGACGCCAT TCTCGCGCTC AACCTCAGCG CGGTATTCCA TTGCACGCGC
CTGGCCCTGC CGGACATGCG CGCGCAGGAC TGGGGGCGCA TCATCAACAT CGCCTCGGTG
CACGGCAGCG TCGGCTCGCT CGGCAAGGCG GCCTATGTCG CGGCCAAGCA CGGCGTGCTC
GGCCTGACCA AGGTGGTGGC GCTGGAAACC GCCCTGAGCG GGGTCACCTG CAATGCCATC
TGTCCCGGCT GGGTGCTCAC GCCCCTGGTG CAGCGGCAGA TCGACGCGCG CATCGCCGCA
GGCGAATCAC CCGAGCAGGC GCGCACGGCG CTGCTGGCCG AGAAGCAGCC ATCGCAGGCC
TTCGTCACCC CGCAGCAGCT CGGCGAGCTG GCGCTGTTTC TGTGCAGTTC GGCGGCGCAG
CAGGTGCGTG GCGCAGCATG GAACATCGAC GGCGGCTGGC TGGCGCAATG A
 
Protein sequence
MMLNGKTALI TGSTSGIGLG IAEVLARNGA SVILNGFGDW QAAAEQLARH EGRVGYHAAD 
LADPAQIEAL FDYARREFGR VDILVNNAGI QHVAPLQDFP AERWDAILAL NLSAVFHCTR
LALPDMRAQD WGRIINIASV HGSVGSLGKA AYVAAKHGVL GLTKVVALET ALSGVTCNAI
CPGWVLTPLV QRQIDARIAA GESPEQARTA LLAEKQPSQA FVTPQQLGEL ALFLCSSAAQ
QVRGAAWNID GGWLAQ