Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4332 |
Symbol | |
ID | 5107106 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 4747711 |
End bp | 4749030 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640505598 |
Product | outer membrane porin |
Protein accession | YP_001189811 |
Protein GI | 146309346 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.994922 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGT CCAATCTGGC GCTGGCCGTC GCCCTGGCCG CTCTGGCCAC CGAAGCGACT GCCGCCGGTT TCATCGAAGA CAGCAAGGCC AGCATCGGCC TGCGCAATTT CTATTACGAC CTCAACACCA AGAACACCGC CAACAACAAT GGCGAGGCGC AGGAGTGGGG GCAGGGCTTC ATCTTCAACT ACAGCTCCGG TTTCACCGAA GGCACCGTCG GCTTCGGCCT CGACGCCATC GGCCTGCTGG GCGTCAAGCT GGATTCCGGC GGCCGCAATA CCAAGACCGG GCGCGACCGC ACTCCCGGCC AGCTGTTCCC GCTCGATAGC GACGGCAGCG CGGTGGACGA GTACAGCAAG GCCGGCGTGA CCGCCAAGGT GCGCCTGTCC AAGACCGAGG CGCGCCTCGG CACCCTGCTG CCAAAGCTGC CGGTGGTGAC CTTCAACGAC GGCCGCCTGC TGCCGCAGAC CTTCGAAGGC GGGCAGATCA CCTCCAACGA GATCGACGGC CTGACCCTGA CCGCCGGCCA GCTGGAAAGC ACCAAGACCC GCAGCTCCAC CGACGACATC GCCCTGCGTA TCGCCGGCGC CACCGGTGAC GCCGACACCA ACAAGTTCTA CTTCGCCGGC GGCGACTACA AGCTGACCAA GGACCTGGCG CTGCAGTACT ACTACGGCAA TCTGGAAGAC TTCTACAAAC AGCACTTCCT TGGCCTGGCG CACAACTGGG CGATCGGCCC GGGTTCGCTG AAGACCGACC TGCGCTACTT CGACAGCGGT TCCGACGGCA AGAACGGCAG CGCGGCCGGT CGCGCCCAGG GTTACCGCAG CGCCGGCTAC TGGCGTGCCG GCGACAGCAG CACCGGCGAG GTCGACAACC AGACCTGGAG CGCGCTGTTC ACCTACACCC TGGGCAGCCA CTTCGCCAGC CTGGGCTACC AGCAGGTCGA AGGCGACAGC GCCTTCCCGT TCCTCAACCA GGGCGGCGGC TCCTCGTCCT ACCTGATCAC CGACCGCCAG ATCGGCAAGT TCCAGAACGC CGGTGAGCGC ACCTGGGTGG CCGAGTACGG CTACGACTTC GCCAAGCTCG GCGTGCCGGG CCTCAAGGCC AGCGTCGCCT ACCTCAAGGG CGACAACGTC GATTCCGCCA ACGGTGACCT GAAGGAATGG GAGCGCGATT TCCGCCTCGA CTACACCCTG CAGGACGGCC CGCTGAAAGG CCTGGGTGTG TCCTGGCGCA ACGCGACCCA GCGCGGCAAC GTCACCACCG ATGCCGACGA GAACCGTTTG ATTTTGAGCT ACACCCTGAC GCTGCTCTGA
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Protein sequence | MNKSNLALAV ALAALATEAT AAGFIEDSKA SIGLRNFYYD LNTKNTANNN GEAQEWGQGF IFNYSSGFTE GTVGFGLDAI GLLGVKLDSG GRNTKTGRDR TPGQLFPLDS DGSAVDEYSK AGVTAKVRLS KTEARLGTLL PKLPVVTFND GRLLPQTFEG GQITSNEIDG LTLTAGQLES TKTRSSTDDI ALRIAGATGD ADTNKFYFAG GDYKLTKDLA LQYYYGNLED FYKQHFLGLA HNWAIGPGSL KTDLRYFDSG SDGKNGSAAG RAQGYRSAGY WRAGDSSTGE VDNQTWSALF TYTLGSHFAS LGYQQVEGDS AFPFLNQGGG SSSYLITDRQ IGKFQNAGER TWVAEYGYDF AKLGVPGLKA SVAYLKGDNV DSANGDLKEW ERDFRLDYTL QDGPLKGLGV SWRNATQRGN VTTDADENRL ILSYTLTLL
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