| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4309 |
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| Symbol | |
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| ID | 5107083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4716856 |
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| End bp | 4719156 |
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| Gene Length | 2301 bp |
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| Protein Length | 766 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640505575 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001189788 |
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| Protein GI | 146309323 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTATCG ACATCGCCGC CTTGCGCCTG ACCCTGGGCT ACCTGCTGCT CGCCGGTCTG
TGGATTCTTC TCAGCGACCA ACTGTTGACC GTGCTGGGCC TGTCACTGGC CCAGCTGGAA
CGGCTGCAAT CGCTCAAGGG CCTGATCTTC GTCGGCCTGA CCGCGGCGTT GCTGTATCTG
GTGCTGCATC GGCACGCCCA GCAGTACCGA CGTGCGCGCC TGCAACTGAC CAGCAATGAG
GAGCGCCTGC GCCTGGCCCT GGATGCCACC CGCGACGGGC TCTGGGACTG GGACTTCGCG
GCCCAGCGGG TGTTCTTCTC CCCCAGCTAC GCCGCCCTGC TCGGGTTGAC CCCGCAGGCG
CTTGGCGACA CCCGCGATGC CTGGGCCGAA CGCCTGCATC CGGAAGACCG CGAGCGGGTG
CTGCAGGCAC TGGCCCTCGA CCAGCAGTAC GACAGCTACG ACAACGTTTA CCGCCTGCGC
CACGCCGACG GCACCTATCG CTGGTTCCAC TCGCGCGGCC GCCTGTTGCG CGACGAAGGC
GGGCGGCCAC AGCGTTTCAT CGGCATCGCC AGCGACATCA CCCAGCAACG CGCCAACGAC
GAAAGCCTGC GCCAGGCTGC GGCCGTATTC GATGCCACGC AGGAAGGCGT GCTGGTCACC
GACCCCGAGC AGCGCATCGT TCACGTCAAC CCGGCCTTCA GCCGCATCAC CGGCTACAGC
GCCGAAGAGG TCCTGGGCCA GCACCCCACC CTGCTCAAGT CCGGCCGTCA CGACGCCGCC
TTCTACCAGA GCCTGTGGCA GGCCCTGCAC AATCGTGACG CCTGGAGCGG TGAGGTGTGG
AACCGGCGCA AGAGTGGCGA GATCTACCCG CAATGGCAGT GCATCCGCGT CATCCACGAC
GAGCATGGGC GCATCAGCCA TTACGTCGCG GTGTTCTCCG ACATCACCGC GCTCAAGCGC
TCGCAGCGCG AACTCGACTA CCTCGCTCAT CACGACCCGC TGAGCAACCT GCCCAACCGG
CTGCTGTTCA CCGAGCGGAT CGCCCACGCC CTCGAACGCA GCAAGAGCGA GCAACTGCGT
GGCGCCGTGC TGCTGATCGA TCTGGATCAC TTCAAGCACA TCAACGAAAG CCTTGGCCAC
AACGTCGGCG ACCTGCTGCT CAAGAGCGTC GGCGAGCGAT TGCAGCAGGA CCTTCCCGGC
GGCTGCACCC TGGCCCGCCT GGGTGGCGAC GAATTCGGCC TGCTCAGCGA AACCTGCGCC
GACGCGCCAC AGGCCGCCGA GCTGGCGCAG AACCTGCTGC GCTGTCTGGA GGCGCCCTTT
CGCCTCGATG AGCACGAGTT GTATATCGGC GCCAGCATCG GCATCAGCCT GTTTCCGGAT
GATGCCGACA GCGTCGAGCA GGTGCTGCGC AACGCCGACT CGGCCCTGTT CAAGGCCAAG
AGCAGCGGGC GCGAGGGCTA TGCCTTCTAC GTGCAGGAAC TGACCGATTA CGCCCGCCAG
CGCGTGGAGC TGGCCAGTAG CCTGCGCCAC GCCCTGGACA ATCATGAGCT ACGGGTGTTC
TACCAGCCGC TGCACGACTT GGAGAACGGC AACCCGGTCG GCATGGAAGC GCTGGTGCGC
TGGCAGCATC CGCAGCGCGG CCTGATTCCC CCAGCGGAGT TCATCCCGAT CGCCGAAGAC
AACGGCATGA TCGGCCCCAT CGATGCCTGG GTGCTGGAGC AGGCCTGTGG CCAGATGATG
CGCTGGAATG CCGAAGGCTC CGCCCTGCGT TTCGTCGCGG TGAACGTCTC CAGCCGCCTG
TTCAGCCGCG GCGAGCTCGA TCTGAAGGTG GCCCAGGTCC TGGCGGAAAC CGGCCTGTCG
CCGCAGCAGC TGGAACTGGA GGTGACCGAG AGCGCGATCA TGGAAGACCC CGATGCCGCC
CTCTCCCTGC TGACCCGCCT GCGCGCCCTG GGTGTGCGCC TGGCCATCGA CGACTTCGGT
ACCGGTTACA GTTCCCTGGC GCGCCTCAAG CGCCTACCGG TGGACAAGCT CAAGCTCGAC
CAGAGCTTCG TGCGCGGCCT GCCGGACGAC ATCGAGGACG CCGCCATCGC TCGCGCCGTG
ATCGCGCTGG GCCATAGCCT GGGCCTGAAC GTACTGGCCG AAGGCATCGA GTCGCCGGCT
CAGGTGGACT TCCTGCGCGC CCTCGGCTGC GATTATGGCC AGGGCTATCA CTTCGGCCGT
CCCGCACCGG TAACCGCGAA CCATGGCGGC ACGCCGATGG CGACCGTGGC ACAGGCCAGC
CAGACCGATA CGAGGAGCTG A
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| Protein sequence | MRIDIAALRL TLGYLLLAGL WILLSDQLLT VLGLSLAQLE RLQSLKGLIF VGLTAALLYL
VLHRHAQQYR RARLQLTSNE ERLRLALDAT RDGLWDWDFA AQRVFFSPSY AALLGLTPQA
LGDTRDAWAE RLHPEDRERV LQALALDQQY DSYDNVYRLR HADGTYRWFH SRGRLLRDEG
GRPQRFIGIA SDITQQRAND ESLRQAAAVF DATQEGVLVT DPEQRIVHVN PAFSRITGYS
AEEVLGQHPT LLKSGRHDAA FYQSLWQALH NRDAWSGEVW NRRKSGEIYP QWQCIRVIHD
EHGRISHYVA VFSDITALKR SQRELDYLAH HDPLSNLPNR LLFTERIAHA LERSKSEQLR
GAVLLIDLDH FKHINESLGH NVGDLLLKSV GERLQQDLPG GCTLARLGGD EFGLLSETCA
DAPQAAELAQ NLLRCLEAPF RLDEHELYIG ASIGISLFPD DADSVEQVLR NADSALFKAK
SSGREGYAFY VQELTDYARQ RVELASSLRH ALDNHELRVF YQPLHDLENG NPVGMEALVR
WQHPQRGLIP PAEFIPIAED NGMIGPIDAW VLEQACGQMM RWNAEGSALR FVAVNVSSRL
FSRGELDLKV AQVLAETGLS PQQLELEVTE SAIMEDPDAA LSLLTRLRAL GVRLAIDDFG
TGYSSLARLK RLPVDKLKLD QSFVRGLPDD IEDAAIARAV IALGHSLGLN VLAEGIESPA
QVDFLRALGC DYGQGYHFGR PAPVTANHGG TPMATVAQAS QTDTRS
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