Gene Pmen_4303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4303 
Symbol 
ID5107077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4710559 
End bp4711494 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content65% 
IMG OID640505569 
ProductSPFH domain-containing protein/band 7 family protein 
Protein accessionYP_001189782 
Protein GI146309317 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATCG GTGGCGTCCT GCTGCTGTTC GTCGGCCTGG CCGTGGCCAT CGTCTACATG 
GGGTTCAAGG TGGTGCCGCA GGGCTCGGAA TGGACGGTGG AGCGCTTCGG CCGCTATACC
ACCACGCTCA AGCCCGGTCT CAACATCATC GTCCCGGTGA TGGACCGTAT CGGCCGCAAG
CTCAACGTGA TGGAGAGCGT GCTCGATATC CCGCCGCAGG AGGTGATCAG CGCCGATAAC
GCCATCGTGC AGATCGATGC GGTGTGCTTC TTCCAGGTGA TCAATGCGGC CCAGGCCGCC
TACGAGGTCA ACGACCTGGA GCACGCCATC CGCAACCTGG TGATGACCAA CATCCGTACC
GTGCTCGGCT CCATGGAGCT GGACGCCATG CTCAGCCAGC GCGATGCGAT CAACGAGCGT
CTGCTCAAGA CCGTGGACGA AGCCACCGCC CCCTGGGGTA TCAAGATCAC CCGGATCGAG
ATCAAGGACA TCAGCCCGCC CGCCGACCTG GTCGAGGCCA TGGCCAGCCA GATGAAGGCC
GAACGCCTCA AGCGCGCACA GATTCTCGAA GCCGAAGGCT CGCGCTCGGC CGCCATCCTC
ACCGCAGAGG GGCACAAGCA GGCGGAGATT CTCCGTGCCG AGGGCGAGCG CCAGGCCGCC
TTCCTCGAAG CCGAGGCACG CGAGCGGGCA GCGCAGGCCG AAGCGGAGGC GACTCGCGTG
GTATCCCAGG CCATTGCCGA AGGCAACGTG CAGGCGGTCA ATTATTTCGT CGCGCAGAAA
TACGTCGAGG CGCTCGGGCA ACTGGCATCG GCCAACAACA GCAAGGTAGT GCTGATGCCG
CTGGAGGCCA GCCAGGTGAT CGGCGCGGTG GGCGGCATCG GCGAAATCGT CAGGGCCACC
TTCGGCGCCG ATGCTACAGG CGGGAAGCGG GGCTGA
 
Protein sequence
MEIGGVLLLF VGLAVAIVYM GFKVVPQGSE WTVERFGRYT TTLKPGLNII VPVMDRIGRK 
LNVMESVLDI PPQEVISADN AIVQIDAVCF FQVINAAQAA YEVNDLEHAI RNLVMTNIRT
VLGSMELDAM LSQRDAINER LLKTVDEATA PWGIKITRIE IKDISPPADL VEAMASQMKA
ERLKRAQILE AEGSRSAAIL TAEGHKQAEI LRAEGERQAA FLEAEARERA AQAEAEATRV
VSQAIAEGNV QAVNYFVAQK YVEALGQLAS ANNSKVVLMP LEASQVIGAV GGIGEIVRAT
FGADATGGKR G