| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4301 |
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| Symbol | |
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| ID | 5107075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4707832 |
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| End bp | 4709616 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505567 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001189780 |
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| Protein GI | 146309315 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCAT TTGCCGCCAC CGCCCAAGAC CGCGTACTGG ATCTTGGCGA CCTGCTGCGC
GAGCTGGTTG CCCAGGGCCG GGTCGCCCAG GAGGTGGCCG AGCAGTGCCT GGCGATTCGC
CGCAGTTCGC TGAACAACAC CCAGCACCCG CTGGAATTCC TCGCGGCGCA GCAGGTCGAC
GACCTGACCC GCCCGGGCAA GAAACTCGAT CTGGAAACCC TTACCGTCTG GCTGGCCAAC
TTCGCCGGCC AACCCTACCT GCGCATCGAC CCGCTGAAGA TCGACGTACC GGCCATCACC
CCATTGATGT CCTACGCCTT CGCCCAGCGT CACAAGATCC TTGCCGTGGC GGTGGACAGC
GAGAGCGTGA CCATCGCCAG CAGCCAGCCG CTGGTGCACA GCTGGGAAGC CAACCTGATC
CACGTGCTCA AGCGCCCGAT CAAGCGCGTG GTGGCTAACC CGGCGGACAT CCAGCGCTTC
ACCACCGAGT TCTATCGCCT GGCCCGCTCG GTCAGCGGTG CCAATGCCAC CGATCAGAAG
ATCAGCGGCG TCGGCAACTT CGAGCAATTG CTCAGCCTCG GTGCGCAGGA TCAGGAGCCG
GACGCCAACG ATGCGCACAT CGTCAACATC GTCGACTGGC TGTTCCAGTA CGCCTTCCAG
CAGCGCGCCA GCGATATCCA CATCGAACCG CGCCGCGAGC AGGGCACCGT GCGCTTTCGC
ATCGACGGCG TGCTGCACAA CGTCTACCAG TTCCCGGCCC AGGTCACCAT GGCGGTGGTC
AGCCGCCTGA AAAACCTCGG CCGCATGAAC ATCGCCGAAA AGCGCAAACC GCAGGACGGC
CGGGTCAAGA CCAAGACCCC GGACGGCGGC GAAGTGGAGC TGCGCCTGTC CACCCTGCCC
ACCGCCTTCG GCGAGAAGAT GGTGATGCGT ATCTTCGACC CCGAGGTGCT GCTGAAGAGC
CCCGACCAGC TCGGCTTCTC CCCGGACGAC CTGCGCCGCT GGCATAGCAT GACGAGCCAG
CCCAACGGCA TCATCCTGGT CACCGGCCCC ACCGGCTCGG GCAAGACCAC CACGCTCTAC
ACCACGCTCA AGCAACTGGC CACGCCGGAG GTGAACGTCT GCACCATCGA GGACCCGATC
GAGATGATCG AGGGCGCCTT CAACCAGATG CAGGTGCAGC ACAACATCGA CCTGACCTTC
GCCAGCGGCG TGCGCGCCCT GATGCGCCAG GACCCGGACA TCATCATGGT CGGCGAGATT
CGCGACCTGG AAACCGCCGA GATGGCCATC CAGGCCGCAC TCACCGGTCA CCTGGTACTC
TCCACCCTGC ACACCAACGA TGCCCCCAGC GCCATCACCC GCCTGCTGGA ACTGGGCGTG
CCGCACTACC TGCTCAAGGC CACCATCCTC GGCGTCATGG CCCAGCGCCT GGTGCGTACC
CTGTGCCCGC ACTGCAAGGC ACCGGTGCAG CTGGACGAGG ACACCTGGAA CGGCCTGACC
CGGCCTTGGA GCTCGCCACT GCCGACCCAG GCGCACCACG CCGTCGGTTG CCTGGAATGT
CGCGAAACCG GCTACCGCGG CCGCGCCGGC GTCTACGAGA TCATGCTGAT CAACGACGCC
ATCAAGCCGC TGATCAGCGC CGACACCGAC CTCACCGCCC TGCGCCGTGC GGCCTTCAAG
GACGGCATGC GCAGCCTGCG CCTGTCCGGT GCACAGAAGA TCGCCGCGGG CCTGACCACC
ATTGAGGAAG TGCTGCGCGT CACGCCGCAG AGCGAGCATC GCTGA
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| Protein sequence | MSAFAATAQD RVLDLGDLLR ELVAQGRVAQ EVAEQCLAIR RSSLNNTQHP LEFLAAQQVD
DLTRPGKKLD LETLTVWLAN FAGQPYLRID PLKIDVPAIT PLMSYAFAQR HKILAVAVDS
ESVTIASSQP LVHSWEANLI HVLKRPIKRV VANPADIQRF TTEFYRLARS VSGANATDQK
ISGVGNFEQL LSLGAQDQEP DANDAHIVNI VDWLFQYAFQ QRASDIHIEP RREQGTVRFR
IDGVLHNVYQ FPAQVTMAVV SRLKNLGRMN IAEKRKPQDG RVKTKTPDGG EVELRLSTLP
TAFGEKMVMR IFDPEVLLKS PDQLGFSPDD LRRWHSMTSQ PNGIILVTGP TGSGKTTTLY
TTLKQLATPE VNVCTIEDPI EMIEGAFNQM QVQHNIDLTF ASGVRALMRQ DPDIIMVGEI
RDLETAEMAI QAALTGHLVL STLHTNDAPS AITRLLELGV PHYLLKATIL GVMAQRLVRT
LCPHCKAPVQ LDEDTWNGLT RPWSSPLPTQ AHHAVGCLEC RETGYRGRAG VYEIMLINDA
IKPLISADTD LTALRRAAFK DGMRSLRLSG AQKIAAGLTT IEEVLRVTPQ SEHR
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