| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4297 |
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| Symbol | |
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| ID | 5107071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4704676 |
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| End bp | 4705956 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505563 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001189776 |
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| Protein GI | 146309311 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTCC TGTTCCTCTT CCTGCTGCTG TTCCTGCTGA TGTTCATCGG CGTGCCGATT
GCCGCGTCGC TCGGCCTGGC CGGCTCGATC ACCATCATGC TGTTCAGCCC CGACTCGGTG
CGCTCGCTGG CGATCAAGCT GTTCGAGACC TCCGAGCACT ACACCCTGCT GGCCATCCCG
TTCTTCCTGC TCTCCGGTGC GTTCATGACC ACCGGCGGCG TGGCCCGTCG TCTGATCGAC
TTCGCCAACG CCTGCGTCGG CCACATCCGT GGCGGCCTGG CCATCGGTGC GGTGCTGGCG
TGCATGCTGT TCGCCGCACT GTCCGGCTCC TCGCCGGCCA CCGTGGCCGC GGTCGGCTCC
ATCGCCATCG CCGGCATGGT GCGCTCCGGT TATCCGCAGG CCTTTGGCGC CGGCATCGTG
TGCAACGCCG GTACCCTGGG CATCCTGATT CCGCCGTCGA TCGTGATGGT GGTGTACGCC
GCCGCCACCG AGCAGTCGGT GGGCAAGCTG TTCATGGCCG GCGTGGTGCC CGGCGTGATG
CTCGGCCTGG CGCTGATGAT CGCGATCTAC ATCGTCGCGC GCATCAAGAA GCTGCCGGCC
CTGCCGCGCG CCAGCTTCCG CGAGTGGCTG CGCGCTGCGC GCGAGGCGTT CTGGGGTCTG
CTGCTGATGG TGATCATCCT CGGCGGTATC TACAGCGGCA TGTTCACGCC CACCGAGGCC
GCGGCCGTGG CGGCGGTCTA CGCCGGCTTC GTCGCGCTGT TCGTGTACAA GGACCTGACC
ATCCGCGAGT GCCCGAAGGT GCTGCTGGAG TCCGGCAAGC TGACCATCAT GCTGATGTTC
ATCATCGCCA ACGCCATGCT CTTCGCCCAC GTGCTGACCA CCGAGCAGAT CCCCCAGCAG
ATCACCGCCT GGGTGGTGGA GCTGGGCCTG CAGCCCTGGC AGTTCCTGCT GGTGGTGAAC
ATCGTGCTGC TGGTGGCCGG CGCCTTCATG GAGCCCTCGG CGATCATCCT GATCCTCGCA
CCGATCCTCT TCCCCATCGC CATGCAGCTG GGCATCGACC CGATCCACCT GGGCATCATC
ATGGTGGTGA ACATGGAGAT CGGCCTGATC ACGCCACCCG TGGGACTGAA CCTGTTCGTC
ACCTCGGCGG TGACCGGCAT GCCGCTGACC CACGTGATCC GCGCCGCCCT GCCGTGGCTG
ATGATGCTGA TCAGCTTCCT GATGGTGATC ACCTACATCC CGGCCGTGTC CATGACCCTG
CCGAACCTGC TCGGTATGTG A
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| Protein sequence | MTVLFLFLLL FLLMFIGVPI AASLGLAGSI TIMLFSPDSV RSLAIKLFET SEHYTLLAIP
FFLLSGAFMT TGGVARRLID FANACVGHIR GGLAIGAVLA CMLFAALSGS SPATVAAVGS
IAIAGMVRSG YPQAFGAGIV CNAGTLGILI PPSIVMVVYA AATEQSVGKL FMAGVVPGVM
LGLALMIAIY IVARIKKLPA LPRASFREWL RAAREAFWGL LLMVIILGGI YSGMFTPTEA
AAVAAVYAGF VALFVYKDLT IRECPKVLLE SGKLTIMLMF IIANAMLFAH VLTTEQIPQQ
ITAWVVELGL QPWQFLLVVN IVLLVAGAFM EPSAIILILA PILFPIAMQL GIDPIHLGII
MVVNMEIGLI TPPVGLNLFV TSAVTGMPLT HVIRAALPWL MMLISFLMVI TYIPAVSMTL
PNLLGM
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