Gene Pmen_4291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4291 
Symbol 
ID5107065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4697982 
End bp4698530 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content64% 
IMG OID640505557 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001189770 
Protein GI146309305 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.288271 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAGTCA TCGCAACTGC ACTACCGGAA GTGCTGATTC TCGAACCCCA GGTATTCGGC 
GACGAGCGCG GCTTCTTCTA CGAAAGCTTC AACGCGCGGC GCTTTGCCGA AGCCACCGGG
GTGAACCGCG AATTCGTCCA GGACAACCAC TCGCGCTCGG CGCGTGGGGT GCTGCGCGGC
CTGCACTATC AGTTGCAGCA GGCCCAGGGC AAGCTGGTGC GGGCCAGCGC TGGCGAGGTC
TATGACGTGG CGGTGGATGT GCGGCGCAGC TCGCCGAACT TCGGCAAATG GGTCGGCGTG
CATCTGTCGG CCGAAAACAA GCGCCAGCTA TGGGTGCCGG AGGGTTTCGC CCATGGTTTT
CTGGTGCTCA GCGAGTACGC CGAGTTCCTC TACAAGACCA CCGACTACTA CGCCCCCGCC
CATGAGCGCT GCATCCGCTG GGATGATGCG CACCTGGCCA TCGACTGGCC GCTGGACGGA
CTGACGCCGC AACTGTCGGC CAAGGACCAG CAGGGCCTGA GCCTGCAGGA CGCCGAGACA
TTCGCATGA
 
Protein sequence
MKVIATALPE VLILEPQVFG DERGFFYESF NARRFAEATG VNREFVQDNH SRSARGVLRG 
LHYQLQQAQG KLVRASAGEV YDVAVDVRRS SPNFGKWVGV HLSAENKRQL WVPEGFAHGF
LVLSEYAEFL YKTTDYYAPA HERCIRWDDA HLAIDWPLDG LTPQLSAKDQ QGLSLQDAET
FA