| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4261 |
|---|
| Symbol | |
|---|
| ID | 5107303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4664986 |
|---|
| End bp | 4666680 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640505526 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001189740 |
|---|
| Protein GI | 146309275 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.157557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00000000178827 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGGTGCCA TGCCGCAGCC GTTCCAGTGC CCGAAGACCG GGACTTACTA CTACCGAAAG
GTCATCCCGA AGGAGCTTCG CCCCCTGGTC GGTCGTGGCT CAGAGTGGAA AGTCTCTCTG
GGCACTAAGA GCTTGGCCGA GGCTCGCATC CCGTTCGCGG AGGAGTCTGC CCGCTGCGAA
GCGGCTATCA CCCTGGCCCG CGCCTCCCTA CGGGGTGAAT CGTCCCTCCT GCCTGCCGAT
GCCCCGAAAC TGGCCGACCG CTGGGTAGCT GCCGAGCTGG CGGCCTGGGA GCGCGATAAC
GAACTGATTC GCCAGTTCCT GGCCCTCGCT GGTGGCGACG TCGTGACGCC CCTGGAAGTG
ATGGACGAGG AGAGCCCCTC CCTCCAGACC CTCCTGGACG ATGCCATGCG GAAAACCGTA
GCCGCAGCGG GGCATCCGGT GCCCCCTTCG ACCTCCCCGG CCCACACCGC TCTCCACCGG
GAGTTCTTCA TGGCCTGGCG GACCCTATGC GAGACCGCCC TACAGCGCCA CCACGGCGAC
TGGCGCACGG CCCCTGCCCT CCCCGCAGCC TCGCTTCCGC TAACGCAGGA AGCCCCCTCC
CACGGGCATA CAGGCAAGGG GCTCCTCCTT TCCGAGGTGG CGACCAAGTG GGCCGAGTCG
AAACGACAGG ACAACGCCGG CCTGGGCGAC CTCTCGAAGA CCATCGCCGA ATATACGGAC
TGTATGCAGC GCCTGATCTT CGTGGTCGGT GACATTCCCG CATCGCAGGT CTCCAAGTCC
ACCATCCACA ACTTCCGCGT CACCCTCGGC CAACTTCCGA AAGGTCGCTG GAAGCCAGGC
CTGCCCCTGG ACGCGCTGCG TGCCCAGGTA GAACAAGGCG CCGCCACCAT GGAGCTGGCG
ACTATCCGCA AGAAGTTGGC TGCCCTAGCG ACCATCTTCA AGTTCGCCTG TGAACGCCTG
GAAGCCCTGA AGGAGGAGCC AGTGGCCGCC TCTGGAGTAC TGCGCGACCT CCGTAACGCA
ATCAACAAGG CCGCTCTCCA CAAGGAAGCC CCCAAGAAGG GCTATAGCCG AGCGGAACTG
ACCACCATTT TCTCCAGCCC ACTGTTCAAG GCCGCCTGGT CTCCCAAGCG TGCCGACTAC
GGCCAGGCCC TCTACTGGCT CCCCCTTCTC ATGGCCTACA CGGGCGCTCG CCGTGAAGAG
GTCGCACAAC TCCTGGTGTC CGACGTGGAG CAAGATGAGG AGTCTGGCGT CTGGTGCCTC
GCCATTCGCC CAGGGGACGG GAAGTCGTTG AAGACCGTCA GTAGCCGCCG CCAGGTGCCA
CTGCACGATG ACCTCCTGGC CCTTGGCTTC CTCGACTACA GGGCCAGCGT CCCCGCCAGC
GGTCGCCTGT TCCCAAAACT GAAGCCGCAT AAAGACGGCC TCGGCCACGC GATAGGCAAG
ACCTGGGACA ACTACCTCCA AGATGAGGTG AAGCTCCAGA CCACGGCCAA GCCCGCCCAT
GGATTCCGGC ATGCCTTCAA GACGCTGTGC CGCGAAGTGG GCATCCCGAA GGAAGTTCAC
GATTGGATGA CAGGACACTC TCCCATGAAC GTGGGCGACG GTTACGGCGA GCACCCTGTA
TGCCGCATGG AAAGGGAGCT GAAGAAGTTC CCGAGCATAG CTCGCATGGC AGGCCTGCTG
CCCCGAGAGG TATAA
|
|---|
| Protein sequence | MGAMPQPFQC PKTGTYYYRK VIPKELRPLV GRGSEWKVSL GTKSLAEARI PFAEESARCE
AAITLARASL RGESSLLPAD APKLADRWVA AELAAWERDN ELIRQFLALA GGDVVTPLEV
MDEESPSLQT LLDDAMRKTV AAAGHPVPPS TSPAHTALHR EFFMAWRTLC ETALQRHHGD
WRTAPALPAA SLPLTQEAPS HGHTGKGLLL SEVATKWAES KRQDNAGLGD LSKTIAEYTD
CMQRLIFVVG DIPASQVSKS TIHNFRVTLG QLPKGRWKPG LPLDALRAQV EQGAATMELA
TIRKKLAALA TIFKFACERL EALKEEPVAA SGVLRDLRNA INKAALHKEA PKKGYSRAEL
TTIFSSPLFK AAWSPKRADY GQALYWLPLL MAYTGARREE VAQLLVSDVE QDEESGVWCL
AIRPGDGKSL KTVSSRRQVP LHDDLLALGF LDYRASVPAS GRLFPKLKPH KDGLGHAIGK
TWDNYLQDEV KLQTTAKPAH GFRHAFKTLC REVGIPKEVH DWMTGHSPMN VGDGYGEHPV
CRMERELKKF PSIARMAGLL PREV
|
|---|
| |