Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4248 |
Symbol | |
ID | 5106672 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4652499 |
End bp | 4653815 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640505512 |
Product | carboxyl-terminal protease |
Protein accession | YP_001189727 |
Protein GI | 146309262 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.00499045 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTCATC GCTTCCGCCC CACCTGCCTG GCCCTGGCCC TCGGGCTGCT GCTCGGCGTT CCAGCCCTGC ACGCGGCCGA GCCTGCCCCC GCGCCGGCAG CGGCGGCGAG CGGCAAGGCA CCGCTGCCGC TGGATGATCT GCGCACCTTC GCCGAGGTGA TGGACCGCAT CAAGGCCGCC TATGTCGAGC CGGTGAGCGA CAAGACCCTG CTGGAGAATG CCATCAAGGG CATGCTCAGC AACCTCGACC CGCATTCGGC CTACCTGGAA CCCGAGGCCT TCCTCGAACT GCAGGAGAGC ACCAGCGGCG AGTTCGGCGG ACTGGGCATC GAGGTCGGCA TGGAGGATGG CTTCGTCAAG GTGGTCTCGC CGATCGATGA CACCCCGGCG TCCAAGGCCG GCATCCAGCC CGGCGACCTG ATCGTCAAGA TCGACGGCCA GCCGACCAAG GGCCTGTCGA TGATGGAGGC CGTGGACAAG ATGCGCGGCA AGGCCGGCAG CAAGATCGAG CTGACCCTGG TACGCGACGG CGGCCGCCCG TTCGACCTGA CCCTGACCCG CGCGGTGATC AAGGTACGCA GCGTCAAGAG CCAGATGCTC GAGGACGGCT ACGGCTACCT GCGCATCTCG CAGTTCCAGG TCAACACCGG CGAGGAAGTC GGCAAGGCGC TGACCAAGCT GCGCCAGGAG AACGGCAACA AGAAGCTGCG CGGCCTGGTG ATGGATCTGC GCAACAACCC CGGCGGCGTG CTGCAGGCGG CGGTGGAAGT CACCGATCAC TTCCTCAAGA GCGGCCTGAT CGTCTACACC GAGGGCCGCC TGGCCAACTC CGAGCTGCGC TTCAATGCCG ACCCGGCCGA CGCCAGCGAG GGCGTGCCGC TGGTGGTGCT GATCAATGGC GGCAGCGCCT CGGCTTCGGA AATCGTCGCC GGCGCCCTGC AGGACCACAA GCGCGCGGTG CTGATGGGCA CCGACAGTTT CGGCAAGGGC TCGGTGCAGA CCGTGCTGCC GCTGAACAAC GACCGCGCCC TGAAGCTGAC CACTGCGCTG TACTTCACCC CCAACGGCCG CTCGATCCAG GCCCAGGGCA TCGTCCCCGA CATCGAAGTG GCGCGCGCCA AGGTGACGCG CGAACAGGAC ATCGAGGGCG TCAAGGAAGC CGATCTGCAA CGTCACCTGG GCAACGGCAA CGGCGGCGCC GATCGCCCGA GCAAGGCCGC GCAGGCCGCT CGCGCCGAAC GCCCGCAGGA CGACGACTAC CAGCTGAGCC AGGCGCTCAA CCTGCTCAAG GGCCTGAGCG TCACCCGCGG CAACTGA
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Protein sequence | MSHRFRPTCL ALALGLLLGV PALHAAEPAP APAAAASGKA PLPLDDLRTF AEVMDRIKAA YVEPVSDKTL LENAIKGMLS NLDPHSAYLE PEAFLELQES TSGEFGGLGI EVGMEDGFVK VVSPIDDTPA SKAGIQPGDL IVKIDGQPTK GLSMMEAVDK MRGKAGSKIE LTLVRDGGRP FDLTLTRAVI KVRSVKSQML EDGYGYLRIS QFQVNTGEEV GKALTKLRQE NGNKKLRGLV MDLRNNPGGV LQAAVEVTDH FLKSGLIVYT EGRLANSELR FNADPADASE GVPLVVLING GSASASEIVA GALQDHKRAV LMGTDSFGKG SVQTVLPLNN DRALKLTTAL YFTPNGRSIQ AQGIVPDIEV ARAKVTREQD IEGVKEADLQ RHLGNGNGGA DRPSKAAQAA RAERPQDDDY QLSQALNLLK GLSVTRGN
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