Gene Pmen_4200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4200 
Symbol 
ID5106624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4603497 
End bp4604615 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content65% 
IMG OID640505464 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001189679 
Protein GI146309214 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCGC AGGCTGGGAA CGACGCGTTC CTGCGATTCA CCAACGTGAA GAAGACCTAC 
GACCACAAGA CGCTGGTGGT CAAGGATTTC AACCTCAACG TGGCCAAGGG CGAATTCATC
ACCCTGCTCG GCCCCTCGGG CTCGGGCAAG ACCACCTGCC TGATGATGCT CGCCGGTTTC
GAGGACGTGA CCAGCGGCGA GATCCTGATC AACGGCCGCA ACGTCACCAG CATCGCCCCC
TACGACCGCA ACATCGGCAT GGTCTTCCAG CAGTACGCGC TGTTCCCGCA CATGACCATC
CGCGAGAACC TGGCCTACCC GCTGAAGATC CGCAAGCTGC CCAAGGACGA GATCCGTGCC
AAGGTCGAGG ACTACCTCGC CCTGGTCGAG CTGCAGGCCT TCGGCGGCCG CTACCCCGGC
CAGCTCTCCG GCGGTCAGCG CCAGCGCGTG GCCCTGGCCC GCGCACTGAT CTTCGCCCCG
GACATCGTGC TGATGGACGA GCCGCTCGGC GCGCTGGACA AGAAGCTGCG CGAGCAGATG
CAGTTCGAGA TCAAGCGCCT GCACGAGCAG CTCGGCTTCA CCGTGATCTA CGTTACCCAC
GACCAGACCG AAGCGCTGAC CATGAGCGAC CGCATCGCCG TGTTCAACAA CGGCGTGGTG
CAGCAGTGCG CCGCGCCGCA CGTGCTCTAC GAACGTCCGG CCAACCTGTT CGTCGCCGAC
TTCATCGGCG AGAGCAACAA GCTGGCCGGG GTGATCGAGA GCGTCGCCGA CGACAGCGTG
CAGGTGCGTC TGGACGATGG CGGCCTGGTC CGGACGCTGA AGGCCAACTG CACCGAGGTC
GGCCAGCCGA CCACGGTGTC GGTACGCCCG GAGAAGCTCA ACTTCACCGA CCGCCTTGGC
GGCTCCGGCA ACCAGGTCAA GGCGCGCTTC GTCACCCGCC ACTACGTCGG CGAGTACATC
CGCTATCACT TCGAGACCGC CAGCGGCAGC GAGCTGGTGG TGAAGAACCT CAACGACAGC
TCGGCCCCGC ACCTCAGCGC GCATGACGAA GTCGCCCTCG CCTGGCTGCC GGAAGACAGC
CAGGCACTGG ATCGATCGGA AGTCCCACCC CACAACTAG
 
Protein sequence
MAAQAGNDAF LRFTNVKKTY DHKTLVVKDF NLNVAKGEFI TLLGPSGSGK TTCLMMLAGF 
EDVTSGEILI NGRNVTSIAP YDRNIGMVFQ QYALFPHMTI RENLAYPLKI RKLPKDEIRA
KVEDYLALVE LQAFGGRYPG QLSGGQRQRV ALARALIFAP DIVLMDEPLG ALDKKLREQM
QFEIKRLHEQ LGFTVIYVTH DQTEALTMSD RIAVFNNGVV QQCAAPHVLY ERPANLFVAD
FIGESNKLAG VIESVADDSV QVRLDDGGLV RTLKANCTEV GQPTTVSVRP EKLNFTDRLG
GSGNQVKARF VTRHYVGEYI RYHFETASGS ELVVKNLNDS SAPHLSAHDE VALAWLPEDS
QALDRSEVPP HN