Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4200 |
Symbol | |
ID | 5106624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4603497 |
End bp | 4604615 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640505464 |
Product | spermidine/putrescine ABC transporter ATPase subunit |
Protein accession | YP_001189679 |
Protein GI | 146309214 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGCGC AGGCTGGGAA CGACGCGTTC CTGCGATTCA CCAACGTGAA GAAGACCTAC GACCACAAGA CGCTGGTGGT CAAGGATTTC AACCTCAACG TGGCCAAGGG CGAATTCATC ACCCTGCTCG GCCCCTCGGG CTCGGGCAAG ACCACCTGCC TGATGATGCT CGCCGGTTTC GAGGACGTGA CCAGCGGCGA GATCCTGATC AACGGCCGCA ACGTCACCAG CATCGCCCCC TACGACCGCA ACATCGGCAT GGTCTTCCAG CAGTACGCGC TGTTCCCGCA CATGACCATC CGCGAGAACC TGGCCTACCC GCTGAAGATC CGCAAGCTGC CCAAGGACGA GATCCGTGCC AAGGTCGAGG ACTACCTCGC CCTGGTCGAG CTGCAGGCCT TCGGCGGCCG CTACCCCGGC CAGCTCTCCG GCGGTCAGCG CCAGCGCGTG GCCCTGGCCC GCGCACTGAT CTTCGCCCCG GACATCGTGC TGATGGACGA GCCGCTCGGC GCGCTGGACA AGAAGCTGCG CGAGCAGATG CAGTTCGAGA TCAAGCGCCT GCACGAGCAG CTCGGCTTCA CCGTGATCTA CGTTACCCAC GACCAGACCG AAGCGCTGAC CATGAGCGAC CGCATCGCCG TGTTCAACAA CGGCGTGGTG CAGCAGTGCG CCGCGCCGCA CGTGCTCTAC GAACGTCCGG CCAACCTGTT CGTCGCCGAC TTCATCGGCG AGAGCAACAA GCTGGCCGGG GTGATCGAGA GCGTCGCCGA CGACAGCGTG CAGGTGCGTC TGGACGATGG CGGCCTGGTC CGGACGCTGA AGGCCAACTG CACCGAGGTC GGCCAGCCGA CCACGGTGTC GGTACGCCCG GAGAAGCTCA ACTTCACCGA CCGCCTTGGC GGCTCCGGCA ACCAGGTCAA GGCGCGCTTC GTCACCCGCC ACTACGTCGG CGAGTACATC CGCTATCACT TCGAGACCGC CAGCGGCAGC GAGCTGGTGG TGAAGAACCT CAACGACAGC TCGGCCCCGC ACCTCAGCGC GCATGACGAA GTCGCCCTCG CCTGGCTGCC GGAAGACAGC CAGGCACTGG ATCGATCGGA AGTCCCACCC CACAACTAG
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Protein sequence | MAAQAGNDAF LRFTNVKKTY DHKTLVVKDF NLNVAKGEFI TLLGPSGSGK TTCLMMLAGF EDVTSGEILI NGRNVTSIAP YDRNIGMVFQ QYALFPHMTI RENLAYPLKI RKLPKDEIRA KVEDYLALVE LQAFGGRYPG QLSGGQRQRV ALARALIFAP DIVLMDEPLG ALDKKLREQM QFEIKRLHEQ LGFTVIYVTH DQTEALTMSD RIAVFNNGVV QQCAAPHVLY ERPANLFVAD FIGESNKLAG VIESVADDSV QVRLDDGGLV RTLKANCTEV GQPTTVSVRP EKLNFTDRLG GSGNQVKARF VTRHYVGEYI RYHFETASGS ELVVKNLNDS SAPHLSAHDE VALAWLPEDS QALDRSEVPP HN
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