Gene Pmen_4177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_4177 
Symbol 
ID5106601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp4580463 
End bp4581923 
Gene Length1461 bp 
Protein Length486 aa 
Translation table11 
GC content68% 
IMG OID640505441 
Productpeptidase M16 domain-containing protein 
Protein accessionYP_001189656 
Protein GI146309191 
COG category[R] General function prediction only 
COG ID[COG0612] Predicted Zn-dependent peptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.733027 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACTG AGCACCGCCG CCTGGGCCTG CTCGGCCTAA TCCTGTCCGC TGCCCTGGCG 
CTGGGCGCCT GCGCCAGCCT GTCCGCTCCG ACGCTGAGCG GCGATGCCGC GAAACTGCAG
TCGTTGGCCG AGCTCGATGG CCAGGCACCG ACCCGCCGCA CCCTGGAAAT CCAGACCTGG
ACCACGCCAC AAGGCGCCAA GGTGCTGTTC GCCCCGGCCC GTGAGCTGCC GATGTTCGAC
CTGCGCCTGA CCTTCGCTGC CGGCAGCAGC CAGGACAACG GCGTGCCGGG CCTGGCCACC
CTGACCAACG CCATGCTCAA CGAAGGCGTA CCGGGCAAGG ATGTCGGCGC CATCGCCGCC
GGCTTCGAGG GCCTGGGCGC CGAATTCGGC AACGGTGCCT ACCGCGACAT GGCCGTGGCC
AGCCTGCGCA GCCTGAGCGC CAAGGAGCAG CGCGACCCGG CACTGGCACT GTTCGCCGAG
GTCCTGGGCA AACCGACCTT CCCCGAGGAT TCGCTGGCGC GGATCAAGAA CCAGCTGCTG
GCCGGCTTCG AGTTCCAGAA GCAGAACCCC GGCAAGCTGG CCAGCCTGAA GCTGTTCGAG
CGCCTGTACG GCCAGCACCC CTACGCGCAT CCGAGCGACG GTACCGCGCA GTCGATACCG
ACCATCGGCC GTCAGCAGCT GCAGGCCTTC CACGCTCGTG CCTACGCGGC CGGCAACGCG
GTGATCGCCC TGGTCGGCGA CCTCTCGCGC AGCGAAGCCG AGGCCATCGC CAACCAGGTG
TCCGCAACCC TGCCGCAGGG GCCGGCACTG CCGCGCATCG CCCAGCCGCA AGCACCCAAG
CCGGGCGTTA GCCACATCGA ATTTCCCTCC AACCAGACCC ACCTGCTGAT CGCCCAGCTC
GGCATCGACC GTCGCGACCC GGACTACGCC GCGCTCTACT TGGGCAACCA GATTCTCGGC
GGCAGCGGCT TCGGCACCCG CCTGATGACC GAAGTGCGCG AGAAGCGCGG CCTGACCTAC
GGCGTCTACT CAGGCTTCAG CGCCATGCAG GCGCGCGGCC CGTTCATGAT CAACCTGCAG
ACCCGTGCGG ACCTGAGCGA GGGCACCCTG GCACTGGTCA AGCAGCTGCT CGCCGACTAT
CTGCGCGAAG GCCCGACCCA GCAGGAGCTG GACAACGCCA AGCGTCAGCT GGCCGGCAGC
TTCCCGCTGT CCACCGCGAG CAACGCCGAT ATCGTCGGCC AGTTGGCGTC GATGGGCTTC
TACGACCTGC CGCTGAGCTA TCTGGACGAC TTTATGCGTG ACGTCCAGGC GCTGAGCATC
GAACAGGTCA AGACCGCCAT GGCCAAGCAC CTCGACCCCG AGGCGCTGGT GGTGGTCACG
GCCGGCCCGA GCGTGACGCA GAAAGAGCTG CCGCCGCCCA ACGAGGATCC GGTCGAGCAG
CCCAGCACGG TGCCGCACTG A
 
Protein sequence
MKTEHRRLGL LGLILSAALA LGACASLSAP TLSGDAAKLQ SLAELDGQAP TRRTLEIQTW 
TTPQGAKVLF APARELPMFD LRLTFAAGSS QDNGVPGLAT LTNAMLNEGV PGKDVGAIAA
GFEGLGAEFG NGAYRDMAVA SLRSLSAKEQ RDPALALFAE VLGKPTFPED SLARIKNQLL
AGFEFQKQNP GKLASLKLFE RLYGQHPYAH PSDGTAQSIP TIGRQQLQAF HARAYAAGNA
VIALVGDLSR SEAEAIANQV SATLPQGPAL PRIAQPQAPK PGVSHIEFPS NQTHLLIAQL
GIDRRDPDYA ALYLGNQILG GSGFGTRLMT EVREKRGLTY GVYSGFSAMQ ARGPFMINLQ
TRADLSEGTL ALVKQLLADY LREGPTQQEL DNAKRQLAGS FPLSTASNAD IVGQLASMGF
YDLPLSYLDD FMRDVQALSI EQVKTAMAKH LDPEALVVVT AGPSVTQKEL PPPNEDPVEQ
PSTVPH