| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4172 |
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| Symbol | |
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| ID | 5105691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4574881 |
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| End bp | 4575735 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640505436 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_001189651 |
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| Protein GI | 146309186 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00647174 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACTT CCTTGCAACC TGTTCATGCT TTGGTTCCGG GCGCCAACCT GGAAGCATAC
GTGCATGCCG TCAACAGCAT CCCGTTGCTG ACGCCCGAGC AGGAGCGTGA ACTGGCCGAG
AGTCTCTACT ATCAGCAGGA TCTCGAGGCC GCCCGCCAGA TGGTGCTGGC CCACCTGCGT
TTCGTGGTGC ATATCGCCCG CAGCTACTCT GGTTATGGTC TGGCCCAGGC CGACCTGATC
CAGGAAGGCA ACGTCGGCCT GATGAAGGCG GTCAAGCGCT TCAACCCGGA AATGGGCGTG
CGTCTGGTGT CCTTCGCCGT GCACTGGATC CGTGCCGAAA TCCACGAGTT CATCCTGAAG
AACTGGCGCA TCGTCAAGGT GGCCACCACC AAGGCGCAGC GCAAGCTGTT CTTCAACCTG
CGCAGCCAGA AGAAGCGTCT GGCCTGGCTG AACAACGACG AAGTCACCGC CGTGGCCGAG
AGCCTGGGCG TCGAGCCGCA CGAAGTGCGC GAGATGGAAA GTCGTCTGAC CGGCCAGGAC
ATGGCCTTCG ACCCGGCCAG CGATGCCGAC GACGACAGCG CCTTCCAGTC GCCGGCGCAC
TACCTGGAAG ACCACCGCTA TGACCCGGCC CGCCAACTCG AGGATGCCGA CTGGAGCGAC
AGTTCCAGCA GCAACCTGCA CGAAGCATTG GAAAGCCTGG ACGAGCGCAG CCGTGACATC
CTCTACCAGC GCTGGCTGGC CGAGGAGAAG GCGACGCTGC ACGACCTGGC CGCCAAGTAC
AACGTGTCGG CCGAGCGTAT CCGCCAGCTC GAGAAGAACG CGATGAACAA GCTCAAGGGC
TCGATTGCCG CCTGA
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| Protein sequence | MSTSLQPVHA LVPGANLEAY VHAVNSIPLL TPEQERELAE SLYYQQDLEA ARQMVLAHLR
FVVHIARSYS GYGLAQADLI QEGNVGLMKA VKRFNPEMGV RLVSFAVHWI RAEIHEFILK
NWRIVKVATT KAQRKLFFNL RSQKKRLAWL NNDEVTAVAE SLGVEPHEVR EMESRLTGQD
MAFDPASDAD DDSAFQSPAH YLEDHRYDPA RQLEDADWSD SSSSNLHEAL ESLDERSRDI
LYQRWLAEEK ATLHDLAAKY NVSAERIRQL EKNAMNKLKG SIAA
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