Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4160 |
Symbol | |
ID | 5105679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4563009 |
End bp | 4565255 |
Gene Length | 2247 bp |
Protein Length | 748 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640505424 |
Product | general secretion pathway protein D |
Protein accession | YP_001189639 |
Protein GI | 146309174 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGATCC TCTCCCGACT ACTCAGGACG CTGTGCTGCG CCGCCCTGCT GCTGGTGCTC GCAGGCCAGG CCCACGCCAC AGCGGTGCAG CCCGGCCGGA GCGAAGAGAG CTGGACCGTC AACATGCAGG GCGCGGACAT CCGCGACTTC ATCGAGCAGA TCTCCAACAT CAGCGGCCAG ACCTTCATCA TCGACCCGCG GGTCAAGGGC CAGGTCACGG TGATCGCCCA GGAGCCCATG GGCCTGACCG AGCTGTACAA GCTGTTTCTC TCGGTGATGA CCACCCACGG CTTTGCCGTC ATGCCGCAAG GCGACCAGCT CAGCATCATG CCCAATGCCG AGGCCAGAAG CAGCGCCGGC AGCCAGGGCA ACCTGGAAAC CCGCGTGCTG CAGGTACAGC ACGGCGCCGC CAATGACCTG CTGCCGATGA TCCGCCCGCT GGTGGCCAAC CACGGCCACC TGGCCGCGGT GCCCTCGTCC AACAGCCTGA TCATCAGCGA CGCGCCCGCC AACATCGAAC GCATCGGCGA CCTGATTCGC CAGCTGGACG ACCGCAGCCA GGACAACTTC AGCGTCTACG AGCTCAAGCA CGCCTGGGTC AGCGATCTGG CGAACCTGCT CGGCGCCTCG CTGCAGAACG CCCAGGCCGG TGGCGCCCAG GTCATCGCCG ACCCGCGCAG CAACCGCCTG CTGCTGCTCG GCCCTCGCGA AGCGCGGCTG CGCCTGCTGA AGCTGGCGCA AAGCCTCGAC ACGCCCAGCT CGCGCTCGGC CAACACGCGG GTGATACGCC TACGCCATGC CGACGCCAAG CAGCTGGCCG AGACCCTGGG CGATTTCGGC GACAACCTGA GCCAGAGCCA GGGCAACCAG AGTTCGACGC CCCTGAAACT GATGATCCGC GCCGACCAGA GCCTCAACGC CATCGTCATC ATGGCCGAAG CCGACATGGT CAGCCTGTTC GAGGATCTGG TGCGCCAGCT GGATGCGCCG CGCGCGCAGG TACTGGTGGA AGCCGCCATC GTCGAGATGT CCGGCGACAT CAACGACGCG CTGGGCGTGC AGTGGGCCAT CGACGGCCGC CACAACGCCC TGGGCGGGGT CAATTTCAGC AACACCGGGC TGTCCATCGG CACCCTGCTC GGCGCCATCG CCCGCGACGA GACCGCCGAG CTGGCCAAGA CACTGCCCAA CGGAGCGATC TTCGGCCTGG GCAATGACAA CTTCGGCATG CTGATCACCG CCCTGTCAGC CACCGGCAAG AGCAATCTGC TGTCCACGCC CACACTGCTG ACCCTGGACA ATCAGCCGGC GGAGATTCTG GTCGGGCAGA ACGTGCCGTT CCAGACCGGC TCCTACACCA CCGACGCGTC GGGCGCGGGC AATCCCTTCA CCACCATCGA GCGCAAGGAC ATCGGCGTCA CCCTCAAGGT CACGCCGCAT ATCAACGACG GCGCCACGCT GCGCCTGGTG ATCGAGCAGG AAATCTCCTC CATCGCTCCC AGCACCGGCC TCAATGCCCA GGCGGTGGAT CTGGTCACCA ACAAGCGCTC GATCAAGAGC ACCGTGCTGG CCGATGACGG CCAGGTGATC GTGCTCGGCG GCCTGATTCA GGACGACACC TCGGCCAGCG CGAGCAAGGT TCCCCTGCTG GGCGACATCC CGGGCGTCGG CCGGCTGTTC CGCTCGACCC GCGACGCACG GCAGAAACGC AACCTGATGG TCTTCCTGCG TCCGAGCGTG GCGCGTGACG GCGTAGGCCT GGCCAACCTG AGCCTCGGCA AGTACCGCGA CCTGCGCCTG CTCGGCCAGG CCAGCGGCTA CCACCACCTG CCGCCGCAGG CCCACGATCT GTTCAGCCAG GACGCGGCCA CGCCCGTCAC CGATCTGCGC CAGCCCAAGC TCCAGCCTGC GCAACCACAG CCACAGCCAC AGCCACAACG CAGCCTGATC GAGACGCCCA GGCCGGTCGA TCCGGCCAGT CTGGGCGATG GTCAGGGCGG CGACGTCGCG ACGGCGCGCG CCCACGAGCG CTATACCATT CGCCTGATCG AGGGCGAAAG CCAGGCGTTC ATGCAGGCCC TGCTCGGCCG TCATCCCGAC CAGCCGCTGC GCCTGCAGCA GCACGAAAGC GGCACTCGCT ACGCCCTGCT CTATGGCAGC TATCCGAGCC GCGAGCTGGC CCTCAAGGCG CTGGCTCACC TGCCCGAGCA ACTGCCCAGC CGCACGGCTG CGGCAATCCC CGAGTAG
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Protein sequence | MPILSRLLRT LCCAALLLVL AGQAHATAVQ PGRSEESWTV NMQGADIRDF IEQISNISGQ TFIIDPRVKG QVTVIAQEPM GLTELYKLFL SVMTTHGFAV MPQGDQLSIM PNAEARSSAG SQGNLETRVL QVQHGAANDL LPMIRPLVAN HGHLAAVPSS NSLIISDAPA NIERIGDLIR QLDDRSQDNF SVYELKHAWV SDLANLLGAS LQNAQAGGAQ VIADPRSNRL LLLGPREARL RLLKLAQSLD TPSSRSANTR VIRLRHADAK QLAETLGDFG DNLSQSQGNQ SSTPLKLMIR ADQSLNAIVI MAEADMVSLF EDLVRQLDAP RAQVLVEAAI VEMSGDINDA LGVQWAIDGR HNALGGVNFS NTGLSIGTLL GAIARDETAE LAKTLPNGAI FGLGNDNFGM LITALSATGK SNLLSTPTLL TLDNQPAEIL VGQNVPFQTG SYTTDASGAG NPFTTIERKD IGVTLKVTPH INDGATLRLV IEQEISSIAP STGLNAQAVD LVTNKRSIKS TVLADDGQVI VLGGLIQDDT SASASKVPLL GDIPGVGRLF RSTRDARQKR NLMVFLRPSV ARDGVGLANL SLGKYRDLRL LGQASGYHHL PPQAHDLFSQ DAATPVTDLR QPKLQPAQPQ PQPQPQRSLI ETPRPVDPAS LGDGQGGDVA TARAHERYTI RLIEGESQAF MQALLGRHPD QPLRLQQHES GTRYALLYGS YPSRELALKA LAHLPEQLPS RTAAAIPE
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