Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_4150 |
Symbol | |
ID | 5105669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 4554012 |
End bp | 4554704 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640505414 |
Product | alanine racemase domain-containing protein |
Protein accession | YP_001189629 |
Protein GI | 146309164 |
COG category | [R] General function prediction only |
COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.766912 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACGA TAGCAGAGAA TATTGCAAAG GTCGGAGCGC GCATCCGTGA GGCGGCGCAA GCCTCGCAGC GCAATTTTGC CGATATCGGC CTGCTGGCGG TGAGCAAGAC CAAACCGGCC GACGCCATTC GTGAGGCCCA TGCCGCCGGC CTGCGCGATT TCGGCGAGAA CTACCTGCAG GAGGCGCTGG AAAAGCAGGC CGCGCTGAGC GACCTGCCCT TGATCTGGCA CTTCATCGGC CCCATTCAGT CGAACAAGAC CCGGCCCATC GCCGAGCACT TCGACTGGGT GCACTCCGTG GATCGCCTGA AAATCGCCCA ACGCCTGTCC GACCAGCGCC CTGCGCACCT GGCGCCGCTG AATATCTGCC TGCAGGTCAA CGTCAGCGGT GAGGACAGCA AATCCGGCTG CAGCCCCGAG GAACTGCCGG AGCTGGCCCA GGCCATTGCT GCCTTGCCCA ACCTCAAGCT GCGCGGGCTG ATGGCGATCC CCGAACCCAC CGACGACATC GCCGCGCAAC ACGCCGCTTT CGCTCGCCTG CGCCAGTTGC GCGATGATCT CGGTCTGCAA CTCGACACCC TGTCCATGGG CATGAGCCAT GACCTGGAGG CCGCCATCGC CGAAGGCGCC ACTTGGGTGC GCATCGGCAC CGCCCTGTTC GGCGCCCGCG ACTACGGCCA GCCCTCCCAT TGA
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Protein sequence | MSTIAENIAK VGARIREAAQ ASQRNFADIG LLAVSKTKPA DAIREAHAAG LRDFGENYLQ EALEKQAALS DLPLIWHFIG PIQSNKTRPI AEHFDWVHSV DRLKIAQRLS DQRPAHLAPL NICLQVNVSG EDSKSGCSPE ELPELAQAIA ALPNLKLRGL MAIPEPTDDI AAQHAAFARL RQLRDDLGLQ LDTLSMGMSH DLEAAIAEGA TWVRIGTALF GARDYGQPSH
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