| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4148 |
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| Symbol | |
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| ID | 5105667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4551669 |
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| End bp | 4552814 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640505412 |
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| Product | twitching motility protein |
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| Protein accession | YP_001189627 |
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| Protein GI | 146309162 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTCG AAAAACTACT GCGCCTGATG GTCGAAAAAG GCGGCTCCGA TCTGTTCATC
ACCGCTGGCG TGCCGCCGTC GATGAAGGTC AATGGCCGGA TCATGCCGGT GACCAAGAAC
GCCATGTCGC CGGAGCAGAC CCGCGAAACG GTGCTGGGCG TGATGAACGA AGCGCAGCGC
CGCGATTTTG CCGAGAACCA CGAGTGCAAC TTCGCCATCA GTGCCCGTGG CATCGGTCGT
TTCCGCGTCA GTGCCTTCTA CCAGCGCAAC CTGGTGGGCA TGGTGCTGCG CCGCATCGAG
ACCAACATCC CCACCATCGA TGACCTCAAA CTGCCGGAGA TCCTCAAGAA GCTGGCGCTG
ACCAAGCGTG GCCTGGTGCT GTTCGTCGGT GCCACCGGTA CCGGCAAGTC CACCTCGCTG
GCGGCGATGA TCGGCTACCG CAACAAGAAC AGCAGCGGCC ACATCATCTC CATCGAAGAC
CCGATCGAAT ACATCCACCA GCACCAGAAC TGCATCGTTA CCCAGCGCGA GGTGGGCATC
GACACCGAGT CCTTCGAGGT GGCGCTGAAG AACACCCTGC GTCAGGCACC GGACGTGATC
CTCATCGGTG AGGTGCGTAC TCGCGAGACC ATGGACCACG CCGTGGCCTT CGCCGAAACC
GGCCACCTGT GCCTGGCCAC CCTGCACGCC AACAACGCCA ACCAGGCGCT GGACCGCATC
ATCAACTTCT TCCCGGCCGA CCGGCAGAAC CAGGTGTGGA TGGACCTGTC GCTCAACCTC
AAGGCCATCG TCGCCCAGCA GCTGGTGCCG ACCCCTGACG GCAAGGGCCG TCGCGCGGTG
ATCGAGGTGC TGATCAACAC CCCGCTGGCT GCCGACCTGA TCCGCAAGGG CGAGGTGCAC
GAGCTCAAGG GCCTGATGAA GCGCTCCACC GAGCAGGGCA TGCAGACCTT CGATCAGGCG
CTGTACAACC TCTACACCCA GGGCGAGATC ACCTACGAAG ACGCGCTGCT CTACGCCGAC
TCGGCCAACG ACCTGCGCCT GATGATCAAG CTCGGTTCGG AAACCGACGG CGATCACCTG
ACCAGCATGG CCCAGGGTCT GGCGCTGGAG GTCAGCGAGG AAGATCCGGG GCGTCGCTTC
CGCTGA
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| Protein sequence | MEFEKLLRLM VEKGGSDLFI TAGVPPSMKV NGRIMPVTKN AMSPEQTRET VLGVMNEAQR
RDFAENHECN FAISARGIGR FRVSAFYQRN LVGMVLRRIE TNIPTIDDLK LPEILKKLAL
TKRGLVLFVG ATGTGKSTSL AAMIGYRNKN SSGHIISIED PIEYIHQHQN CIVTQREVGI
DTESFEVALK NTLRQAPDVI LIGEVRTRET MDHAVAFAET GHLCLATLHA NNANQALDRI
INFFPADRQN QVWMDLSLNL KAIVAQQLVP TPDGKGRRAV IEVLINTPLA ADLIRKGEVH
ELKGLMKRST EQGMQTFDQA LYNLYTQGEI TYEDALLYAD SANDLRLMIK LGSETDGDHL
TSMAQGLALE VSEEDPGRRF R
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