| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4131 |
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| Symbol | |
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| ID | 5105650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4530410 |
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| End bp | 4531660 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505395 |
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| Product | sarcosine oxidase beta subunit family protein |
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| Protein accession | YP_001189610 |
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| Protein GI | 146309145 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0445173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGTT ATTCCGGCTT CGGCCTGTTC AAGCACTCGT TCAGTCACCA TGAGAACTGG
CAGCGCATGT GGCGTAATCC AACGCCCAAG CCGGTTTACG ACGTGATCAT CGTCGGCGGT
GGCGGCCACG GCCTGGCTAC GGCCTATTAC CTGGCCAAGG AGTTCGGCGT GAAGAACGTC
GCCGTGGTCG AGAAGGGCTG GCTGGGCGGC GGCAATACCG CGCGCAACAC CACCATCGTG
CGTTCCAACT ACCTGTGGGA CGAGTCCGCG CACCTGTACG AGCACGCGAT GAAGCTGTGG
GAGGGCCTGT CCCAGGACCT GAACTACAAC GTCATGTTCT CCCAGCGCGG CGTGTTCAAC
CTCGGCCACA CCCTGCAGGA CATGCGCGAC ATCGAGCGCC GCGTCAGCGC CAACCGCCTC
AACGGTATCG ACGGCGAGGT GGTGGACGCC AAGCAGGTGG CGGAGATGAT CCCCTACCTG
GATTGCTCGA AGAACACCCG TTACCCGATT CTCGGCGCCT CGCTGCAGCG CCGTGGCGGC
GTGGCCCGTC ACGACGCCGT GGCCTGGGGC TTCGCCCGTG CCGCCGACGC CCTGGGCGTC
GACCTGATCC AGCAGACCGA AGTGATCGGC TTCCGCAAGG AAAACGGTGC GGTGATCGGC
GTGGAAACCA GCAAGGGCTT CATCGGCGCC AAGCGCGTCG GCGTGGTCGC TGCTGGTAAC
TCCGGGCACC TGGCCAAGCT CGCCGGCTTC CGCCTGCCGC TGGAGTCGCA CCCGCTGCAG
GCGCTGGTCT CCGAACCGAT CAAGCCGATC ATCGACACCG TGATCATGTC CAACGCCGTG
CACGGCTACA TCAGCCAGTC GGACAAGGGC GACCTGGTCA TCGGCGCCGG CATCGACGGC
TACAACGGCT ACGGCCAGCG CGGCTCCTAC CCGACCATCG AGCACACCCT GCAGGCCATC
GTCGAGATGT TCCCGGTGCT CTCGCGCGTG CGCATGAACC GCCAGTGGGG CGGCATCGTC
GACACCACGC CGGACGCCTG CCCGATCATC GCCAAGACGC CGGTGAAGAA CCTGTACTTC
AACTGCGGCT GGGGCACCGG CGGCTTCAAG GCCACCCCGG GTTCGGGCCA CGTGTTCGCC
GCCAGCCTGG CCAAGGGCGA GATGCACCCG CTGGCCAAGG CCTTCTCCAT CGAGCGCTTC
CACAACGGTG CGCTGATCGA CGAGCACGGC GCAGCCGGTG TGGCCCACTA A
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| Protein sequence | MQRYSGFGLF KHSFSHHENW QRMWRNPTPK PVYDVIIVGG GGHGLATAYY LAKEFGVKNV
AVVEKGWLGG GNTARNTTIV RSNYLWDESA HLYEHAMKLW EGLSQDLNYN VMFSQRGVFN
LGHTLQDMRD IERRVSANRL NGIDGEVVDA KQVAEMIPYL DCSKNTRYPI LGASLQRRGG
VARHDAVAWG FARAADALGV DLIQQTEVIG FRKENGAVIG VETSKGFIGA KRVGVVAAGN
SGHLAKLAGF RLPLESHPLQ ALVSEPIKPI IDTVIMSNAV HGYISQSDKG DLVIGAGIDG
YNGYGQRGSY PTIEHTLQAI VEMFPVLSRV RMNRQWGGIV DTTPDACPII AKTPVKNLYF
NCGWGTGGFK ATPGSGHVFA ASLAKGEMHP LAKAFSIERF HNGALIDEHG AAGVAH
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