| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4129 |
|---|
| Symbol | |
|---|
| ID | 5105648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4526878 |
|---|
| End bp | 4529895 |
|---|
| Gene Length | 3018 bp |
|---|
| Protein Length | 1005 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640505393 |
|---|
| Product | sarcosine oxidase alpha subunit family protein |
|---|
| Protein accession | YP_001189608 |
|---|
| Protein GI | 146309143 |
|---|
| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
|---|
| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG TCAATCGTCT TGCCCAGGGT GGCCGCATCG ACCGCAGCCA GCCCCTGACC
TTCAGCTTCA ACGGCCAGAC CTATCAGGGC TATGCCGGTG ATACACTGGC CGCCGCGCTG
CTGGCCAACG GCGTCGACGT GATCGGCCGC AGCTTCAAGT ACTCGCGCCC GCGCGGCATC
GTTGCCGCCG GCGCCGAAGA GCCCAATGCC GTGCTGCAGA TCGGCTCCAC CGAGGCGGCG
CAGATCCCCA ACGTGCGTGC CACCCAGCAG GCGCTGTACG CGAACCTGAC CGCCACCAGC
ACCAACGGCT GGCCGAGCGT CAACACCGAC CTGATGGGCA TCCTCGGCAA GGTCGGCGGC
GGCATGATGC CGCCCGGTTT CTACTACAAG ACCTTCATGT ACCCGCAGAA CCTGTGGCTG
ACCTACGAGA AGTACATCCG TAAGGCCGCA GGTCTCGGTC GCTCGCCGAA GGAAAACGAC
CCGGACATCT ACGACTACAT GAACCAGCAC TGCGACGTGC TGGTAGTCGG TGCCGGCCCT
GCCGGTCTGG CCGCGGCCCT GGCCGCCGGT CGCAGCGGTG CACGGGTGAT CCTCGCCGAC
GAGCAGGAAG AGTTCGGTGG CAGCCTGCTG TCCACCCGCG AGATGCTCGA TGACAAGCCG
GCCGCCGACT GGGCTGTCAA GGCCATCGCC GAGCTGCAGA AGATGCCGGA AGTGACCCTG
CTGCCGCGTG CCACGGTCAA CGGCTACCAC GATCACAACT TCCTCACCAT TCACCAGCGC
CTCACCGATC ACCTCGGTGA AGTCGCGCCG ATGGGCCAGC CGCGTCAGCG CATGCACCGT
GTGCGTGCCG GTCGCGTGGT GCTGGCCACC GGTGCCCACG AGCGTCCGCT GGTGTACGCC
AACAACGACG TTCCCGGCAA CATGCTGGCC GATGCCGTGT CGACCTACGT GCGTCGTTAC
GGCGTGGCCC CCGGGCAGAA GCTGGTGCTG TCGACCAACA ACGATTACGC CTACCGCGTG
GTGCTCGACT GGCTCGACGC CGGGCGCCAG GTGGTGGCCG TGGCCGACGC GCGCAGCAAC
CCGCGTGGCA GCTGGGTCGA AGAAGCGCGC CGGCGTGGCG TGCGCGTACT CACCGGCAGT
GCCGTGGTCG AGGCGCGCGG TAGCAAGCGC GTTACTGGTG CGCGCATCTG CGCCATCGAC
CTGGTCTCGC ACAAGGTCAC CAGCCCGGGC GAGACCGTCG ACTGCGACCT GATCGTCAGC
TCCGGCGGCT ACAGCCCGGT GGTGCACTTG GCCTCGCACC TGGGCGGGCG TCCGATCTGG
CGTGAAGACA TCCTCGCCTT CGTCCCGGGT GAAGGTTTCC AGAAGCGTCA CTGCGCCGGT
GCCGTGAACG GTGTGTTCGG TCTGGGCGAC GCCCTGGCCG ATGGTTTCGA AGCCGGTGCC
AAGGCTGCGG CGGAAGTCGG TTTCAAGGCT GTGACCGGCA GCCTGCCTAA GGCCGAGAAG
CGTATCGAGG AAGCCTCGGT CGCGCTGTTC CAGGTGCCGC ACGACAAGGG CACTTCCCGT
GCGCCGAAGC AGTTCGTCGA TCAACAGAAC GACGTCACCG CCGCGGGCAT CGAGCTGGCC
ACCCGTGAGG GCTTCGAGTC GGTCGAGCAC GTCAAGCGCT ACACCGCGCT GGGCTTCGGC
ACCGACCAGG GCAAGCTGGG CAACATCAAC GGCCTGGCCA TCGCCGCCAA GTCGCTGGGC
ATCAGCATCA GTGAGATGGG CACCACCATG TTCCGCCCGA ACTACACCCC GGTGACCTTC
GGCGCCATCG CCGGCCGTCA CTGCGGCGAG CTGTTCGAGC CCAAACGCTA CACCGCCCTG
CAGAAATGGC ACCTGGAAAA CGGCGCCGAG TTCGAGGACG TCGGCCAGTG GAAGCGTCCC
TGGTACTTCC CGAAAAACGG TGAAGACCTG CATGCCGCCG TGGCCCGCGA GTGCCTGGCC
GTGCGTAACG CGGTGGGCAT CCTCGACGCC TCGACCCTGG GCAAGATCGA CATCCAGGGC
CCGGATGCGC GCGAGTTCCT CAACCGCGTC TACACCAACG CCTGGACCAA GCTGGACGTG
GGCAAGGCCC GCTACGGCCT GATGTGCAAG GAAGACGGCA TGGTCTTCGA CGACGGCGTC
ACCGCCTGTC TGGCCGACAA CCATTTCGTC ATGACCACCA CCACCGGCGG CGCCGGCCGC
GTGATGGAGT GGCTGGAGAT CTACCACCAG ACCGAATGGC CGGAGCTGAA GGTGTACTTC
ACCTCGGTCA CCGACCACTG GGCAACCATG ACCCTGTCCG GCCCCAACAG CCGCAAGCTG
CTGGCCGAGG TCACCGACAT CGATCTGGAC AAGGATGCCT TCCCGTTCAT GAGCTGGAAG
GAAGGCAAGG TCGGTGGCGT ACCGGCCCGC GTGTTCCGCA TCTCCTTCAC CGGTGAGCTC
TCCTACGAAG TCAACGTGCA GGCCGACTAC GCCCTGGGCG TGTGGGAGCA GATCATCGAG
GCGGGCAAGA AGCACGGCCT GACCCCGTAC GGCACCGAGA CCATGCACGT GCTGCGCGCC
GAGAAGGGTT TCATCATCGT CGGCCAGGAC ACCGACGGTT CGGTCACCCC GGACGATCTG
GGCATGGGCT GGTGCGTCGG TCGCACCAAG CCGTTCTCCT GGATCGGCTG GCGCGGCATG
AACCGCGAGG ACTGCCTGAA GGAAAACCGC AAGCAGCTGA TCGGCCTCAA GCCGCTGGAT
CCGAACAAGG TCCTGCCGGA AGGCGCGCAG CTGGTGTTCG ATCCCAAGCA GCCGATTCCG
ATGACCATGG TCGGCCACGT CACCTCCAGC TACATGAGCG CGGCCATGGG TTACAGCTTC
GCCATGGCCC TGGTCAGGGG TGGCCTGTCG CGTATCGGCG AGCGCGTGTT CGCGCCGCTG
GCCGATGGCA GCGTGATCGA AGCTGAAATC GTCAGCCCCG TGTTCTATGA CCCGAAAGGG
GACCGCCAGA ATGTCTAA
|
|---|
| Protein sequence | MSQVNRLAQG GRIDRSQPLT FSFNGQTYQG YAGDTLAAAL LANGVDVIGR SFKYSRPRGI
VAAGAEEPNA VLQIGSTEAA QIPNVRATQQ ALYANLTATS TNGWPSVNTD LMGILGKVGG
GMMPPGFYYK TFMYPQNLWL TYEKYIRKAA GLGRSPKEND PDIYDYMNQH CDVLVVGAGP
AGLAAALAAG RSGARVILAD EQEEFGGSLL STREMLDDKP AADWAVKAIA ELQKMPEVTL
LPRATVNGYH DHNFLTIHQR LTDHLGEVAP MGQPRQRMHR VRAGRVVLAT GAHERPLVYA
NNDVPGNMLA DAVSTYVRRY GVAPGQKLVL STNNDYAYRV VLDWLDAGRQ VVAVADARSN
PRGSWVEEAR RRGVRVLTGS AVVEARGSKR VTGARICAID LVSHKVTSPG ETVDCDLIVS
SGGYSPVVHL ASHLGGRPIW REDILAFVPG EGFQKRHCAG AVNGVFGLGD ALADGFEAGA
KAAAEVGFKA VTGSLPKAEK RIEEASVALF QVPHDKGTSR APKQFVDQQN DVTAAGIELA
TREGFESVEH VKRYTALGFG TDQGKLGNIN GLAIAAKSLG ISISEMGTTM FRPNYTPVTF
GAIAGRHCGE LFEPKRYTAL QKWHLENGAE FEDVGQWKRP WYFPKNGEDL HAAVARECLA
VRNAVGILDA STLGKIDIQG PDAREFLNRV YTNAWTKLDV GKARYGLMCK EDGMVFDDGV
TACLADNHFV MTTTTGGAGR VMEWLEIYHQ TEWPELKVYF TSVTDHWATM TLSGPNSRKL
LAEVTDIDLD KDAFPFMSWK EGKVGGVPAR VFRISFTGEL SYEVNVQADY ALGVWEQIIE
AGKKHGLTPY GTETMHVLRA EKGFIIVGQD TDGSVTPDDL GMGWCVGRTK PFSWIGWRGM
NREDCLKENR KQLIGLKPLD PNKVLPEGAQ LVFDPKQPIP MTMVGHVTSS YMSAAMGYSF
AMALVRGGLS RIGERVFAPL ADGSVIEAEI VSPVFYDPKG DRQNV
|
|---|
| |