| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4105 |
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| Symbol | |
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| ID | 5105624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4497929 |
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| End bp | 4501036 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640505369 |
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| Product | alpha-1,6-glucosidase, pullulanase-type |
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| Protein accession | YP_001189584 |
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| Protein GI | 146309119 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02103] alpha-1,6-glucosidases, pullulanase-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGATT CGAGATTGCC GCGGTATCTA CTCGGCCTGC TGCTCGCAGG CTCCACCCTG
GCCGGCGCCG AGCCGCTGCA GCCCGGCCCC GACGAGGCGC TGCTGTACTA CCAGCGTAGC
GACGGCGACT ACGCCGGCTG GGGCCTGCAC CTGTGGAACA CCCCGCAATG CAGCGGTGTG
CGTGACGGCA CCAGCTGGGA CCGACCGCTG GCGCCGGCCG GCGTCGATGC CGAGCATGGC
GCCTGGTTCA GCATTGCGCT GACGGCCGAC GCCAGCTGCC TGAACCTGAT CATGCACCGC
GGCGACGACA AGGACCTGGG CGGCGGCGAC CTGATCTGGC GCCTCGACGA GCTGGGCCGA
CGCGCCTTCA GCCAGAGCGG CAGCGCACAG CTGTCGGCCA CCCCCATCGT CGGCACACCG
CTGGCCATCG ACGGCGCCCG CGCGCACTGG CTCGATCCCT TCACCCTGGT GCTGCACGGT
GACAGTGCGG CGGCGCGGCT GGAGCTGCGC TACGCGCCGC AGGCCGATAT CCGCATCGAC
GGCGAGCAGC GCAGCGTCAG CGGTGGCCGC GCCATCGCCC TGCGCCCCGG CAGACTCAAC
GCAACGCTCA AGGCCAGGTT CCCGCATCTG GCCGAACAGC CGGCCTACCG CCTGGAGGTC
GGCGCCAAGA CCCTGCGCAG CGCGCTGAAG AGCCAGCTGC TGGTGCTCGC CTACGACCAG
GACGAACGCC TGCTCAGCGC CACCCAGGTG CAGACGCCCG GCGTGCTCGA TGCGCTCTAT
GCCTACTCCG GCCCGCTGGG CGCCGAAGTC ACCAGGCATG ACGTGCGTTT TCGCCTCTGG
GCCCCCAGCG CCCAGCGTGT GCGCTTGCAT GCCTTCGACC GCAAGAAACG CCTGCTGCCC
GGCTTCCCCA AAGAGATGCG CGAGCATCAC GGCGTGTGGA CCTACAGCGG GCCGAAGCAG
CTGGACCGCG CCTACTACCA GTACGAGGTG AGCGTCTATC ACCCCGTCAG CGGCCGCATC
GAAACCAGCC TGACCAGCGA CCCTTACGCC CTCAGCCTGT CGCGCAACAG TCAGTACGCC
CAGGTGGTGG ATCTGGACGC CGCCGACCTC AAGCCGGCCG GCTGGGACAG CCTGCGCCCG
CCGCGCGCCG CCAAGCCCGA GGCGCGGGTG ATCTACGAGA CCCACGTGCG CGACTTCAGC
GCCAGCGACA GCGCGCTGCC GGCCGCCCAG CGCGGCACCT ACCTGGCCTT CACCCAGCCC
ACCAGCCGCG GCGTGCAGCA CCTGCAGGAG CTGCGCCAGG CCGGGCTGAC CGACGTGCAA
TTGCTGCCGG TATTCGATAT CGCCACGGTG GACGAAGACC CGACCAAGCG CGTCGACCTG
GACGAGCCCT TCGCCAAGCT CTGCGCGTTG TCGGCCAGCG CCCGGCGCAA CTGGGCCGGC
TACTGCAACG CCGGGAGCAT CCGCGAGGTG CTGCAGGGCT TCGATCCGGC CAGCAGCGAC
GCCCAGGCGC TATACGCCGA CCTGCGTGCG CTGGACTCCT TCAACTGGGG CTACGACCCC
TTTCACTACA CGGTGCCGGA GGGCAGCTAC GCCAGCGATG CCGAGGGCGT GGCGCGCATC
CGCGAGTTCC GCCGCATGGT CCAGGCGCTG GCGGAGATGG GCCTGACCAC GGTGATGGAC
GTGGTCTACA ACCACACCCA CGCCTCGGGC CTGGGCGAGC AGTCGGTGCT CGACAAGCTG
GTGCCCGGCT ACTACCACAG GCGCCACCCG GTAACCGGCG CGGTGGAACG CTCCACCTGC
TGCGACAACA CCGCGTCCGA GCACCTGATG ATGGAAAAGC TGATGATCGA CTCGCTGCGC
GTCTGGGCGC GCGACTACAA GATCGGCGGC TTCCGCTTCG ACCTGATGGG CCACCATATG
CGCAGCAACC TGACCAGGGC CCACAAGGCG GTGCGCCAGA TCGACCCGCA GACCTACCTC
TACGGCGAGG GCTGGAACTT CGGCGAGGTG GCCGATGGCG CCCGCGGCGT CAATGCCATC
CAGGCCAACA TGGCCGGCAC CGGTATCGGC ACCTTCAACG ACCGCCAGCG CGACGCCGTG
CGTGGCGGCA GCCCGTTCGA CGGCGGCGAC AGCCTGCGGC GCTTCCAGGG CTTCGCCAAC
GGTCTCTACC TGCTGCCCAA CGAGCTCAAT AGTGGCAGCG CCGGGGAACA GGCCGAGCTG
CTCAGGCTGA AGGATCTGAT CCGCGTCGGC ATCGCCGGCG GCCTGCGCGA CTACCGCTTC
GAGAGCGCCG ATGGCAGCCG CCGGCGCGGC GCCGAGATCG ACTACAACGG CCAGCCGGCC
GGCTACACCC TCGATCCGCA GGAGACCGTC AACTACGTCT CCAAGCACGA CAACCAGACC
CTGTGGGACA TCAACCAGTA CAAGCTGCCC GCCTCCCTCT CCAGCGCCGA ACGGGTGCGC
CTGCAACTGC TCGGCCTGGC CGTACCGCTG TTGAGCCAGG GCGTGCCCTT CATCCACATG
GGCTCGGACA TCCTCCGCTC CAAGTCGATG GAGCGCGACA GCTACGACTC CGGCGACTGG
TTCAACGCGG TGGACTTCAC CTACCAGGAC AACAGCTGGA ATAGAGGATT GCCACGTGAA
GACAAGGACG GCGAGAACTG GCCGCTGATC CGCCAGATCA TCGCCGACGC CAACGCCAAG
CCGAGCAGTG CCGATATCCT CGCGGCCAGG CGGCAGTTCC TCGAACTGCT GCGCATCCGC
AGCGGCAGCC CGCTGTTCCA GCTCGACAGC GCCGCCGAGA TCGACCGGCG CCTGCGCTTT
CACAACACCG GCCCCGACCA GTTGCCCGGC GTGATCGCCT TCAGCCTGGA CGACGGGCGC
GGCACAGGCC GCGATCTCGA TCCGCGACAC GAGGCGCTGA TGGTGGTGTT CAACGCCGGC
GCCGAGCCGA TCAGCCTGCC CGGCGCCCAA CCCGGCCATC GTCTGCACCC TGTGCAACGC
GACTCCAGCG ACGCCCGCAT CCGCCAGGCC AAGGTGGAGA ACGGCCAGTT CCAGGTGCCC
GGGCTGAGTG TGGCGGTGTT CGTTCTGCCG CAGGAAAAGC GGCGCTAA
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| Protein sequence | MHDSRLPRYL LGLLLAGSTL AGAEPLQPGP DEALLYYQRS DGDYAGWGLH LWNTPQCSGV
RDGTSWDRPL APAGVDAEHG AWFSIALTAD ASCLNLIMHR GDDKDLGGGD LIWRLDELGR
RAFSQSGSAQ LSATPIVGTP LAIDGARAHW LDPFTLVLHG DSAAARLELR YAPQADIRID
GEQRSVSGGR AIALRPGRLN ATLKARFPHL AEQPAYRLEV GAKTLRSALK SQLLVLAYDQ
DERLLSATQV QTPGVLDALY AYSGPLGAEV TRHDVRFRLW APSAQRVRLH AFDRKKRLLP
GFPKEMREHH GVWTYSGPKQ LDRAYYQYEV SVYHPVSGRI ETSLTSDPYA LSLSRNSQYA
QVVDLDAADL KPAGWDSLRP PRAAKPEARV IYETHVRDFS ASDSALPAAQ RGTYLAFTQP
TSRGVQHLQE LRQAGLTDVQ LLPVFDIATV DEDPTKRVDL DEPFAKLCAL SASARRNWAG
YCNAGSIREV LQGFDPASSD AQALYADLRA LDSFNWGYDP FHYTVPEGSY ASDAEGVARI
REFRRMVQAL AEMGLTTVMD VVYNHTHASG LGEQSVLDKL VPGYYHRRHP VTGAVERSTC
CDNTASEHLM MEKLMIDSLR VWARDYKIGG FRFDLMGHHM RSNLTRAHKA VRQIDPQTYL
YGEGWNFGEV ADGARGVNAI QANMAGTGIG TFNDRQRDAV RGGSPFDGGD SLRRFQGFAN
GLYLLPNELN SGSAGEQAEL LRLKDLIRVG IAGGLRDYRF ESADGSRRRG AEIDYNGQPA
GYTLDPQETV NYVSKHDNQT LWDINQYKLP ASLSSAERVR LQLLGLAVPL LSQGVPFIHM
GSDILRSKSM ERDSYDSGDW FNAVDFTYQD NSWNRGLPRE DKDGENWPLI RQIIADANAK
PSSADILAAR RQFLELLRIR SGSPLFQLDS AAEIDRRLRF HNTGPDQLPG VIAFSLDDGR
GTGRDLDPRH EALMVVFNAG AEPISLPGAQ PGHRLHPVQR DSSDARIRQA KVENGQFQVP
GLSVAVFVLP QEKRR
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